Browse Element(s) Details


OsAffx.20421.1.S1_at

Description tigr:9638.m02011
TID=OsAffx.20421.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2406011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24010OsAffx.20423.2.S1_x_at11/1110+11974031..11975967F-box domain containing protein
LOC_Os10g24010OsAffx.20423.1.S1_at11/1110+11974031..11975967F-box domain containing protein
LOC_Os10g24020Os.51020.1.S1_at10/1110+11976544..11980225transposon protein, putative, unclassified, expressed
LOC_Os10g24030OsAffx.18369.1.S1_at11/1110+11981065..11981416hypothetical protein
LOC_Os10g24040OsAffx.24242.2.S1_at11/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24040Os.31929.11.S1_x_at1/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24040OsAffx.24242.5.S1_x_at1/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24050OsAffx.30518.1.S1_at11/1110+11988785..11990321Ribosome inactivating protein
LOC_Os10g24060OsAffx.20421.1.S1_at11/1110+11993380..11994214hypothetical protein
LOC_Os10g24060OsAffx.15574.1.S1_at1/1110+11993380..11994214hypothetical protein
LOC_Os10g24070Os.14200.2.S1_x_at11/1110+11996060..12005435expressed protein
LOC_Os10g24070Os.14200.1.S1_at10/1110+11996060..12005435expressed protein
LOC_Os10g24080OsAffx.6747.2.S1_x_at8/1110+12006370..12007211hypothetical protein
LOC_Os10g24080OsAffx.6747.2.S1_at8/1110+12006370..12007211hypothetical protein
LOC_Os10g24080OsAffx.6747.1.S1_x_at2/1110+12006370..12007211hypothetical protein
LOC_Os10g24090NANA10+12011279..12011986hypothetical protein
LOC_Os10g24100OsAffx.20420.1.S1_at11/1110+12017946..12021917hypothetical protein
LOC_Os10g24100OsAffx.20423.2.S1_x_at1/1110+12017946..12021917hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20421.1.S1_at--285--1991Chr10:11993440..11993464 (25 bp)
ACTGCCGTTTCTTTCTTCCTTCATT
LOC_Os10g24060
OsAffx.20421.1.S1_at--656--8311Chr10:11993484..11993508 (25 bp)
GGCTACCGCTCATCAGCGTGACGGA
LOC_Os10g24060
OsAffx.20421.1.S1_at--195--8071Chr10:11993515..11993539 (25 bp)
GGAGAAGTTGATGCCGCTGCCAAGC
LOC_Os10g24060
OsAffx.20421.1.S1_at--660--1511Chr10:11993581..11993605 (25 bp)
AGCAGCGTCGAAGCCTATCACCATG
LOC_Os10g24060
OsAffx.20421.1.S1_at--809--5871Chr10:11993669..11993693 (25 bp)
GAGCGCAAGTGCACGGCTTGGACTC
LOC_Os10g24060
OsAffx.20421.1.S1_at--115--3031Chr10:11993698..11993774 (25 bp)
AATGCGGATGCCACAGCAAGTGCTA
LOC_Os10g24060
OsAffx.20421.1.S1_at--598--5171Chr10:11993897..11993918 (22 bp)
GCAAGTGCTAACCTCGCCACGACGG
LOC_Os10g24060
OsAffx.20421.1.S1_at--231--4811Chr10:11993942..11993966 (25 bp)
GCTCTGGCCAAGGTAGCGTTCTTGG
LOC_Os10g24060
OsAffx.20421.1.S1_at--586--6731Chr10:11993959..11993983 (25 bp)
GTTCTTGGCTGTGGCGCTATGGACC
LOC_Os10g24060
OsAffx.20421.1.S1_at--420--8551Chr10:11994002..11994026 (25 bp)
TGGAGAACTCGCTTTGCGGTAGCAC
LOC_Os10g24060
OsAffx.20421.1.S1_at--103--4211Chr10:11994026..11994050 (25 bp)
CCCGCCGTGTTCTCTGGCAGGAGGA
LOC_Os10g24060
Target Sequence 
ACTGCCGTTTCTTTCTTCCTTCATTTCTCCCCTTTTGTTCTCCTGGCTACCGCTCATCAGCGTGACGGAGCTGGTGGAGA
AGTTGATGCCGCTGCCAAGCACGACTCCCTCCGCGTCATCTCCTCCCTCCTAACCCGCGGCAGCAGCGTCGAAGCCTATC
ACCATGGCCGCACCATCCTCCCTTACCATGGGGCCGGAGTCAGAGCCAGAGCTAGTGGTGGCGGCGGAGGAGCGCAAGTG
CACGGCTTGGACTCGAGCAATGCGGATGCCACAGCAAGTGCTAACCTCGCCACGACGGCCGCGCGCCCGTTGGGCTCGAC
CGCTCTGGCCAAGGTAGCGTTCTTGGCTGTGGCGCTATGGACCGTCGTGCCGTGCTCCCCGTGGAGAACTCGCTTTGCGG
TAGCACCCGCCGTGTTCTCTGGCAGGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis