Browse Element(s) Details


OsAffx.20441.1.S1_at

Description tigr:9638.m01870
TID=OsAffx.20441.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g222006/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g22164Os.35344.3.S1_x_at8/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164Os.35344.18.S1_x_at7/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164OsAffx.22940.5.S1_x_at4/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22164OsAffx.22940.5.S1_at4/1110+11118781..11127943transposon protein, putative, Mutator sub-class
LOC_Os10g22170Os.46889.1.S1_at11/1110+11128950..11132739expressed protein
LOC_Os10g22180OsAffx.20442.1.S1_at11/1110+11132636..11134235hypothetical protein
LOC_Os10g22184NANA10+11137941..11138635hypothetical protein
LOC_Os10g22190OsAffx.4823.1.S1_at1/1110+11140103..11141141hypothetical protein
LOC_Os10g22200OsAffx.20441.1.S1_at6/1110+11142073..11146040hypothetical protein
LOC_Os10g22200OsAffx.22850.1.S1_x_at2/1110+11142073..11146040hypothetical protein
LOC_Os10g22200OsAffx.30486.1.S1_at1/1110+11142073..11146040hypothetical protein
LOC_Os10g22210NANA10+11153736..11159705retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g22220OsAffx.15648.1.S1_at1/1110+11163371..11166699Zinc knuckle family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20441.1.S1_at--323--9011Chr10:11144412..11144436 (25 bp)
TGAATGTGCTTCACAGGGATTGCAT
LOC_Os10g22200
OsAffx.20441.1.S1_at--844--7312Chr10:11144417..11144441 (25 bp)
GTGCTTCACAGGGATTGCATGATAG
LOC_Os10g22200
OsAffx.20441.1.S1_at--50--10733Chr10:11144431..11144455 (25 bp)
TTGCATGATAGAGATAAAGCTCTCA
LOC_Os10g22200
OsAffx.20441.1.S1_at--1035--9631Chr10:5148744..5149213 (25 bp)
TCAGATAGGCAATTGATCAAATCAA
NONE
OsAffx.20441.1.S1_at--761--6411Chr10:11145681..11145824 (25 bp)
GATCTTCCAGGCCAATCCGGTGGAG
LOC_Os10g22200
OsAffx.20441.1.S1_at--750--3631Chr10:11145684..11145827 (25 bp)
CTTCCAGGCCAATCCGGTGGAGGGA
LOC_Os10g22200
OsAffx.20441.1.S1_at--803--7651Chr10:11145861..11145885 (25 bp)
GGGAGGCGACGCCAACGGGCGCTGA
LOC_Os10g22200
OsAffx.20441.1.S1_at--739--7651Chr10:11146030..11146051 (22 bp)
GGGAGGCAACATAAGCGCCCGCACG
NONE
OsAffx.20441.1.S1_at--1030--2413Chr10:11146054..11146078 (25 bp)
AAAATTGCGATTTTCCCAGACACTT
NONE
OsAffx.20441.1.S1_at--771--3152Chr10:11146056..11146080 (25 bp)
AATTGCGATTTTCCCAGACACTTTG
NONE
OsAffx.20441.1.S1_at--29--10611Chr10:11146058..11146082 (25 bp)
TTGCGATTTTCCCAGACACTTTGGG
NONE
Target Sequence 
TGAATGTGCTTCACAGGGATTGCATGATAGAGATAAAGCTCTCAGATAGGCAATTGATCAAATCAACTGGCACACTCACG
AACCTAAAAACAAGATTTTGGACCTGCACTGAAGTTAAGCAGATCTTCCAGGCCAATCCGGTGGAGGGAAGGGGCGTCGG
CGGCGGTGCGGAGATGAGGTCGGGGAGGCGACGCCAACGGGCGCTGACGATGATGAGGCCGGCGGGAGGCAACATAAGCG
CCCGCACGCGAAAATTGCGATTTTCCCAGACACTTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20441.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis