Browse Element(s) Details


OsAffx.20494.1.S1_x_at

Description gb:NM_195861.1
DB_XREF= gi:37533081
TID=OsAffx.20494.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0035F15.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2006011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20030NANA10+9716952..9721448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20040NANA10+9723711..9728788retrotransposon protein, putative, unclassified
LOC_Os10g20050Os.24831.1.S1_x_at9/1110+9732797..9735020retrotransposon protein, putative, unclassified
LOC_Os10g20050Os.24831.3.S1_x_at6/1110+9732797..9735020retrotransposon protein, putative, unclassified
LOC_Os10g20050Os.24831.4.S1_x_at2/1110+9732797..9735020retrotransposon protein, putative, unclassified
LOC_Os10g20060OsAffx.20494.1.S1_x_at11/1110+9741844..9742850hypothetical protein
LOC_Os10g20060OsAffx.20494.2.S1_at10/1110+9741844..9742850hypothetical protein
LOC_Os10g20070Os.20602.2.S1_x_at11/1110+9744749..9746929hAT family dimerisation domain containing protein
LOC_Os10g20080OsAffx.18305.1.S1_at11/1110+9748013..9749270hypothetical protein
LOC_Os10g20080OsAffx.18305.1.S1_x_at11/1110+9748013..9749270hypothetical protein
LOC_Os10g20080Os.53269.1.S1_at1/1110+9748013..9749270hypothetical protein
LOC_Os10g20090Os.11623.1.S1_a_at11/1110+9758099..9763654Cellulose synthase family protein, expressed
LOC_Os10g20100NANA10+9765652..9766167hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20494.1.S1_x_at--198--4871Chr10:9741900..9741924 (25 bp)
GCTTGAGGGCGGCATTTATTGGGCC
LOC_Os10g20060
OsAffx.20494.1.S1_x_at--560--10391Chr10:9741915..9741939 (25 bp)
TTATTGGGCCGGTGTGAGCACGGGA
LOC_Os10g20060
OsAffx.20494.1.S1_x_at--818--4091Chr10:9741966..9741990 (25 bp)
CGACGTGGGCGGGAAATGCGGCTCA
LOC_Os10g20060
OsAffx.20494.1.S1_x_at--1014--611Chr10:9741981..9742005 (25 bp)
ATGCGGCTCAGGGTGGTGGCAGAAT
LOC_Os10g20060
OsAffx.20494.1.S1_x_at--1064--1111Chr10:9742049..9742073 (25 bp)
AGTCCCGCGGTCAGGTGTGGGCGCT
LOC_Os10g20060
OsAffx.20494.1.S1_x_at--124--7731Chr10:9742077..9742101 (25 bp)
GGTGGCGCGGAACCGGCCACGACAT
LOC_Os10g20060
OsAffx.20494.1.S1_x_at--1001--8351Chr10:9742104..9742128 (25 bp)
GGCGGATTCGTCAGCCATGGCTGTT
LOC_Os10g20060
OsAffx.20494.1.S1_x_at--589--1691Chr10:9742116..9742140 (25 bp)
AGCCATGGCTGTTGCCAGTCGGCTG
LOC_Os10g20060
OsAffx.20494.1.S1_x_at--392--6691Chr10:9742126..9742150 (25 bp)
GTTGCCAGTCGGCTGCAGGTAGGAG
LOC_Os10g20060
OsAffx.20494.1.S1_x_at--1158--8391Chr10:9742168..9742192 (25 bp)
GGCCTAGGGTCCCACTTGTCGAAGA
LOC_Os10g20060
OsAffx.20494.1.S1_x_at--100--4311Chr10:9742170..9742194 (25 bp)
CCTAGGGTCCCACTTGTCGAAGAGA
LOC_Os10g20060
Target Sequence 
GCTTGAGGGCGGCATTTATTGGGCCGGTGTGAGCACGGGAGTGGCTGAGAGAGGCGGGGATGCCGGCGACGTGGGCGGGA
AATGCGGCTCAGGGTGGTGGCAGAATCGGCGGAGCGAGTGGGGAGGAGAGCGGGTTTGTGGGGCGACGCAGTCCCGCGGT
CAGGTGTGGGCGCTCGGGGTGGCGCGGAACCGGCCACGACATGGGGCGGATTCGTCAGCCATGGCTGTTGCCAGTCGGCT
GCAGGTAGGAGGAGGAGCTGACAGGTGGGGCCTAGGGTCCCACTTGTCGAAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20494.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis