Browse Element(s) Details


OsAffx.20494.2.S1_at

Description tigr:9638.m01649
TID=OsAffx.20494.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2006010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g20030NANA10+9716952..9721448retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g20040NANA10+9723711..9728788retrotransposon protein, putative, unclassified
LOC_Os10g20050Os.24831.1.S1_x_at9/1110+9732797..9735020retrotransposon protein, putative, unclassified
LOC_Os10g20050Os.24831.3.S1_x_at6/1110+9732797..9735020retrotransposon protein, putative, unclassified
LOC_Os10g20050Os.24831.4.S1_x_at2/1110+9732797..9735020retrotransposon protein, putative, unclassified
LOC_Os10g20060OsAffx.20494.1.S1_x_at11/1110+9741844..9742850hypothetical protein
LOC_Os10g20060OsAffx.20494.2.S1_at10/1110+9741844..9742850hypothetical protein
LOC_Os10g20070Os.20602.2.S1_x_at11/1110+9744749..9746929hAT family dimerisation domain containing protein
LOC_Os10g20080OsAffx.18305.1.S1_at11/1110+9748013..9749270hypothetical protein
LOC_Os10g20080OsAffx.18305.1.S1_x_at11/1110+9748013..9749270hypothetical protein
LOC_Os10g20080Os.53269.1.S1_at1/1110+9748013..9749270hypothetical protein
LOC_Os10g20090Os.11623.1.S1_a_at11/1110+9758099..9763654Cellulose synthase family protein, expressed
LOC_Os10g20100NANA10+9765652..9766167hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20494.2.S1_at--965--4411NONE
GCCAGTCGGCTGCAGATATTCCACT
NONE
OsAffx.20494.2.S1_at--93--4771Chr10:9742687..9742706 (20 bp)
GCTGCAGATATTCCACTTCCGAGAT
LOC_Os10g20060
OsAffx.20494.2.S1_at--262--1271Chr10:9742687..9742711 (25 bp)
AGATATTCCACTTCCGAGATCGTTG
LOC_Os10g20060
OsAffx.20494.2.S1_at--1065--71Chr10:9742691..9742715 (25 bp)
ATTCCACTTCCGAGATCGTTGTTTA
LOC_Os10g20060
OsAffx.20494.2.S1_at--717--9271Chr10:9742699..9742723 (25 bp)
TCCGAGATCGTTGTTTAAACCGTGG
LOC_Os10g20060
OsAffx.20494.2.S1_at--667--8051Chr10:9742724..9742748 (25 bp)
GGAGACAAACCATTTATCCGAAGGT
LOC_Os10g20060
OsAffx.20494.2.S1_at--761--5291Chr10:9742743..9742767 (25 bp)
GAAGGTTGCCCAATGCCCCGACTCT
LOC_Os10g20060
OsAffx.20494.2.S1_at--1007--3011Chr10:9742754..9742778 (25 bp)
AATGCCCCGACTCTTCAAGTTGTCG
LOC_Os10g20060
OsAffx.20494.2.S1_at--896--5051Chr10:9742778..9742802 (25 bp)
GCAGCTTCAGCACAACGTGGCCAAA
LOC_Os10g20060
OsAffx.20494.2.S1_at--854--10511Chr10:9742783..9742807 (25 bp)
TTCAGCACAACGTGGCCAAATCCAG
LOC_Os10g20060
OsAffx.20494.2.S1_at--341--2211Chr10:9742789..9742813 (25 bp)
ACAACGTGGCCAAATCCAGATCAGG
LOC_Os10g20060
Target Sequence 
GCCAGTCGGCTGCAGATATTCCACTTCCGAGATCGTTGTTTAAACCGTGGGGAGACAAACCATTTATCCGAAGGTTGCCC
AATGCCCCGACTCTTCAAGTTGTCGCAGCTTCAGCACAACGTGGCCAAATCCAGATCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20494.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis