Browse Element(s) Details


OsAffx.20499.1.S1_at

Description gb:NM_195841.1
DB_XREF= gi:37533041
TID=OsAffx.20499.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0015I18.4), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1930010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g19250OsAffx.20503.1.S1_at11/1110+9471708..9471978hypothetical protein
LOC_Os10g19270Os.52238.1.S1_at4/1110+9482486..9485306retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os10g19280NANA10+9490426..9492119retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19290NANA10+9493260..9494777retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g19300OsAffx.20499.2.S1_at11/1110+9496961..9500354expressed protein
LOC_Os10g19300OsAffx.8265.1.A1_x_at11/1110+9496961..9500354expressed protein
LOC_Os10g19300OsAffx.8265.1.A1_at11/1110+9496961..9500354expressed protein
LOC_Os10g19300OsAffx.20499.1.S1_at10/1110+9496961..9500354expressed protein
LOC_Os10g19300Os.12308.3.S1_x_at3/1110+9496961..9500354expressed protein
LOC_Os10g19300Os.31640.1.S1_at1/1110+9496961..9500354expressed protein
LOC_Os10g19310OsAffx.8264.1.S1_at11/1110+9506620..9509870transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19314Os.51388.1.S1_at1/1110+9512865..9513176hypothetical protein
LOC_Os10g19318NANA10+9514123..9514413hypothetical protein
LOC_Os10g19322NANA10+9515290..9518594transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19326Os.47463.1.S1_x_at5/1110+9521857..9525557transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g19326Os.14491.2.S1_x_at4/1110+9521857..9525557transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20499.1.S1_at--977--5311Chr10:9497054..9497078 (25 bp)
GAAGGTGAGCTAGGCGATCCCACGT
LOC_Os10g19300
OsAffx.20499.1.S1_at--616--10091Chr10:9497064..9497088 (25 bp)
TAGGCGATCCCACGTCGAGTCCACG
LOC_Os10g19300
OsAffx.20499.1.S1_at--545--4652Chr10:9497088..9497112 (25 bp)
GCGTCGAGCAGGTCGTTCTCTCGGT
LOC_Os10g19300
OsAffx.20499.1.S1_at--383--1311Chr10:9497094..9497118 (25 bp)
AGCAGGTCGTTCTCTCGGTTTCCCT
LOC_Os10g19300
OsAffx.20499.1.S1_at--166--9511Chr10:9497122..9497146 (25 bp)
TCTCCCGGCTGTTTTGTTGTCTGTG
LOC_Os10g19300
OsAffx.20499.1.S1_at--250--4271Chr10:9497126..9497150 (25 bp)
CCGGCTGTTTTGTTGTCTGTGGGTC
LOC_Os10g19300
OsAffx.20499.1.S1_at--556--3411NONE
CAGGTGGGCCCAGAAGTCTATGTCC
NONE
OsAffx.20499.1.S1_at--104--1091Chr10:9498795..9498819 (25 bp)
AGTGGCAGTAAGTCAGCCCGGACGA
LOC_Os10g19300
OsAffx.20499.1.S1_at--215--7091Chr10:9498839..9498863 (25 bp)
GTCAAGGTGGTCATCTTGCACAGGT
LOC_Os10g19300
OsAffx.20499.1.S1_at--280--432Chr10:9498851..9498875 (25 bp)
ATCTTGCACAGGTCCTCGAGGAAGA
LOC_Os10g19300
OsAffx.20499.1.S1_at--524--8251Chr10:9498893..9498917 (25 bp)
GGCACCGCGGCGTTGTACACGCGCA
LOC_Os10g19300
Target Sequence 
GAAGGTGAGCTAGGCGATCCCACGTCGAGTCCACGCGTCGAGCAGGTCGTTCTCTCGGTTTCCCTCTCTCTCCCGGCTGT
TTTGTTGTCTGTGGGTCGGGTAGAGCGGTGGAGGAGAAGATGGACAGGGCGTGGGCAAGCCAGGGAGGCTGCCAGGTGGG
CCCAGAAGTCTATGTCCCGCGATGAACTTGTTCCTATCACTAGGGTGCATGAGGAAGCTCCGTTGACGGAAACAAGCATT
GCAGTTGACGCCATAATCACGAGAAATTTGGAGGATGCAGCACGCGACGACGCCATCCTCCCCACCACCGACGGCGGCGC
CTTCGTGGTCGACCTACACCTCCGCGAAGAACCGGGCGGCCGATCCGGTGGCCTCGCAGGAGGCGATGAAGTTGTAGTGG
CAGTAAGTCAGCCCGGACGACTCCGGTGGCGGCGGCTCCGTCAAGGTGGTCATCTTGCACAGGTCCTCGAGGAAGAAGGT
GTCGCCGCCGGCGGGCACCGCGGCGTTGTACACGCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis