Browse Element(s) Details


OsAffx.20536.1.S1_x_at

Description tigr:9638.m01495
TID=OsAffx.20536.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1802611/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g180103/11hypothetical protein
LOC_Os10g102602/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17980Os.26886.6.S1_s_at11/1110+8780577..8784403transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17980Os.26886.2.S1_s_at9/1110+8780577..8784403transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17980OsAffx.16467.1.S1_at9/1110+8780577..8784403transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g17990Os.23342.1.S1_at11/1110+8789197..8795159Phosphatidate cytidylyltransferase, putative, expressed
LOC_Os10g18010OsAffx.20536.2.S1_x_at11/1110+8806862..8807686hypothetical protein
LOC_Os10g18010OsAffx.20536.2.S1_at11/1110+8806862..8807686hypothetical protein
LOC_Os10g18010OsAffx.20536.1.S1_x_at3/1110+8806862..8807686hypothetical protein
LOC_Os10g18010OsAffx.20666.1.S1_x_at1/1110+8806862..8807686hypothetical protein
LOC_Os10g18010OsAffx.30370.1.S1_x_at1/1110+8806862..8807686hypothetical protein
LOC_Os10g18026OsAffx.20536.1.S1_at11/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026OsAffx.20536.1.S1_x_at11/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026OsAffx.20666.1.S1_x_at4/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026OsAffx.20536.2.S1_x_at2/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18026OsAffx.30370.1.S1_x_at1/1110+8808006..8811853transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18042Os.46306.1.S1_x_at2/1110+8812471..8814672transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18060OsAffx.20535.1.S1_at11/1110+8820983..8826396retrotransposon protein, putative, unclassified
LOC_Os10g18070OsAffx.18282.1.S1_s_at11/1110+8826982..8833441expressed protein
LOC_Os10g18070Os.46184.1.A1_at11/1110+8826982..8833441expressed protein
LOC_Os10g18080OsAffx.8288.1.S1_at11/1110+8835647..8836474hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20536.1.S1_x_at--123--6451Chr10:8808248..8808272 (25 bp)
GATCAAGACCAAGCTCGTAGCCGTG
LOC_Os10g18026
OsAffx.20536.1.S1_x_at--583--8211Chr10:8808288..8808312 (25 bp)
GGCAACCCGAGGTCCGACTCGTCGT
LOC_Os10g18026
OsAffx.20536.1.S1_x_at--718--4251Chr10:8808322..8808346 (25 bp)
CCGTGGTCGAGTTGCTCCGAGCGCT
LOC_Os10g18026
OsAffx.20536.1.S1_x_at--1141--872Chr10:8808349..8808373 (25 bp)
AGGCCGTGCCGATGACGTTCGAGAC
LOC_Os10g18026
OsAffx.20536.1.S1_x_at--479--393Chr10:8808402..8808426 (25 bp)
ATCAGCGGCCTGAGGAAGCACTCGT
LOC_Os10g18026
OsAffx.20536.1.S1_x_at--1138--3892Chr10:8808467..8808491 (25 bp)
CTGGAAGGCGCTGGTCGACGAACAC
LOC_Os10g18026
OsAffx.20536.1.S1_x_at--1081--7792Chr10:8808479..8808503 (25 bp)
GGTCGACGAACACCTGACCAGGAAA
LOC_Os10g18026
OsAffx.20536.1.S1_x_at--305--4151Chr10:8808542..8808566 (25 bp)
CGCGGCTGATCACGCCAACAAGGCA
LOC_Os10g18026
OsAffx.20536.1.S1_x_at--895--2931Chr10:8808585..8808609 (25 bp)
AAGGCAGCGTGCAACAAGCGCAAGG
LOC_Os10g18026
OsAffx.20536.1.S1_x_at--254--1571Chr10:8808667..8808691 (25 bp)
AGCTCAGGGAGCGTTACAGAGACGA
LOC_Os10g18026
OsAffx.20536.1.S1_x_at--337--6771Chr10:8808679..8808703 (25 bp)
GTTACAGAGACGAAGAGACGGCCAA
LOC_Os10g18026
Target Sequence 
GATCAAGACCAAGCTCGTAGCCGTGGTCGGGGAAGACGGCGGCAACCCGAGGTCCGACTCGTCGTCGTCGGAGGCCGTGG
TCGAGTTGCTCCGAGCGCTGCAGGCCGTGCCGATGACGTTCGAGACGCTGGAGGCGAGCAAGATCGGCAAGGCGATCAGC
GGCCTGAGGAAGCACTCGTCGGAGCAGGTGCGCGACCTCGCCGCCGCGCTCTACAAGAGCTGGAAGGCGCTGGTCGACGA
ACACCTGACCAGGAAACCGCCGGCGCCGCCGACCAAGACTGCCTCCGCTCTCGGCGCGGCTGATCACGCCAACAAGGCAA
ACACGGCGGCGCCGAGGAAGGCAGCGTGCAACAAGCGCAAGGAGGCGCCGGCGCTCGCGCCGGAGATGGACGAGGCGAAG
CTGGAGGCGGCGAGGAAGAAGCTCAGGGAGCGTTACAGAGACGAAGAGACGGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20536.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis