Browse Element(s) Details


OsAffx.2054.2.S1_x_at

Description tigr:9629.m02096
TID=OsAffx.2054.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2189011/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g21850Os.34696.2.S1_x_at11/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21850Os.34696.1.S1_x_at11/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21850Os.34696.2.S1_at10/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21850Os.34696.1.S1_at9/111+12240632..12245527protein transport protein, putative, expressed
LOC_Os01g21860Os.1107.2.S1_s_at11/111+12247392..12251519expressed protein
LOC_Os01g21860Os.1107.1.S1_at11/111+12247392..12251519expressed protein
LOC_Os01g21860Os.48883.1.S1_at11/111+12247392..12251519expressed protein
LOC_Os01g21870NANA1+12252518..12252883expressed protein
LOC_Os01g21880NANA1+12262627..12263007expressed protein
LOC_Os01g21890OsAffx.2054.2.S1_at11/111+12265391..12273250NA
LOC_Os01g21890OsAffx.2054.2.S1_x_at11/111+12265391..12273250NA
LOC_Os01g21890OsAffx.23347.2.S1_x_at5/111+12265391..12273250NA
LOC_Os01g21890OsAffx.23347.2.S1_at4/111+12265391..12273250NA
LOC_Os01g21900NANA1+12274415..12274876Soluble inorganic pyrophosphatase, putative
LOC_Os01g21909OsAffx.30564.2.S1_s_at1/111+12277188..12277481hypothetical protein
LOC_Os01g21920OsAffx.11153.1.S1_at11/111+12279711..12280670hypothetical protein
LOC_Os01g21930OsAffx.2056.1.S1_at11/111+12282133..12282462hypothetical protein
LOC_Os01g21940Os.1113.1.S1_at11/111+12285670..12291916Will die slowly protein, putative, expressed
LOC_Os01g21940Os.38429.1.S1_at1/111+12285670..12291916Will die slowly protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2054.2.S1_x_at--731--8811Chr01:12267513..12267537 (25 bp)
TGTTGAACATGTAATTGTCGTCCAT
LOC_Os01g21890
OsAffx.2054.2.S1_x_at--442--5491Chr01:12267509..12267533 (25 bp)
GAACATGTAATTGTCGTCCATGGTA
LOC_Os01g21890
OsAffx.2054.2.S1_x_at--766--751Chr01:12267505..12267529 (25 bp)
ATGTAATTGTCGTCCATGGTAGAAC
LOC_Os01g21890
OsAffx.2054.2.S1_x_at--523--7071Chr01:12267503..12267527 (25 bp)
GTAATTGTCGTCCATGGTAGAACAT
LOC_Os01g21890
OsAffx.2054.2.S1_x_at--916--8711Chr01:12267498..12267522 (25 bp)
TGTCGTCCATGGTAGAACATGTAAC
LOC_Os01g21890
OsAffx.2054.2.S1_x_at--201--811Chr01:12267490..12267514 (25 bp)
ATGGTAGAACATGTAACGGTGAATT
LOC_Os01g21890
OsAffx.2054.2.S1_x_at--317--7051Chr01:12267478..12267502 (25 bp)
GTAACGGTGAATTGTTTGTTCTGGT
LOC_Os01g21890
OsAffx.2054.2.S1_x_at--1058--1911Chr01:12267475..12267499 (25 bp)
ACGGTGAATTGTTTGTTCTGGTTTG
LOC_Os01g21890
OsAffx.2054.2.S1_x_at--522--7351Chr01:12267472..12267496 (25 bp)
GTGAATTGTTTGTTCTGGTTTGTGA
LOC_Os01g21890
OsAffx.2054.2.S1_x_at--47--6871Chr01:12267465..12267489 (25 bp)
GTTTGTTCTGGTTTGTGATGTATTT
LOC_Os01g21890
OsAffx.2054.2.S1_x_at--261--6891Chr01:12267446..12267470 (25 bp)
GTATTTGTTCTTGTCTTCTTGGTTT
LOC_Os01g21890
Target Sequence 
TGTTGAACATGTAATTGTCGTCCATGGTAGAACATGTAACGGTGAATTGTTTGTTCTGGTTTGTGATGTATTTGTTCTTG
TCTTCTTGGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2054.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis