Browse Element(s) Details


OsAffx.20548.1.S1_at

Description gb:NM_195668.1
DB_XREF= gi:37532695
TID=OsAffx.20548.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0004A10.15), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g174701/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g17430OsAffx.8303.1.S1_at11/1110+8449734..8450321retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g17440OsAffx.20549.1.S1_at11/1110+8451569..8452468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g17454Os.7927.2.S1_x_at11/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454Os.7927.1.S1_a_at11/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454Os.7927.1.S1_at11/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454Os.52390.1.S1_at11/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454OsAffx.30437.1.S1_x_at10/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454OsAffx.30437.1.S1_at3/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17454Os.54271.1.S1_at1/1110+8455650..8465123RNA recognition motif family protein, expressed
LOC_Os10g17470OsAffx.20548.1.S1_at1/1110+8473882..8477208retrotransposon protein, putative, unclassified, expressed
LOC_Os10g17489Os.9840.1.S1_at11/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.2.S1_x_at8/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.1.S1_x_at7/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.3.S1_x_at4/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17489OsAffx.22947.5.S1_x_at3/1110+8483906..8496342UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os10g17510OsAffx.8301.1.S1_at10/1110+8501056..8505354hAT family dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20548.1.S1_at--1106--5671Chr10:8477132..8477156 (25 bp)
GACATTCTGGAGTTACCGGCACTTA
LOC_Os10g17470
OsAffx.20548.1.S1_at--821--1571Chr10:8477661..8477685 (25 bp)
AGCTCCTTCTAAGTGGTCCCAATGG
NONE
OsAffx.20548.1.S1_at--143--6471Chr10:8477734..8478056 (25 bp)
GATAAGACTCCCTTTGAGCGTGTGG
NONE
OsAffx.20548.1.S1_at--1000--5931Chr10:8478057..8478081 (25 bp)
GAGCAGTTGCTTATCGTCTTGACTT
NONE
OsAffx.20548.1.S1_at--479--4811Chr10:8478090..8478114 (25 bp)
GCTCTCATGTTCATCCAGTGGTTCA
NONE
OsAffx.20548.1.S1_at--5--3471Chr10:8478105..8478129 (25 bp)
CAGTGGTTCATGTGTCTCTTCTGAA
NONE
OsAffx.20548.1.S1_at--500--2991Chr10:8478191..8478215 (25 bp)
AATGTAGAGCTTACTCCTGTCGCAG
NONE
OsAffx.20548.1.S1_at--511--5031Chr10:8478212..8478236 (25 bp)
GCAGTTCTTCGTCCACAATTGATCA
NONE
OsAffx.20548.1.S1_at--701--2271Chr10:8478245..8478269 (25 bp)
AAATCTGTTGTACCGTATGGGCTGA
NONE
OsAffx.20548.1.S1_at--1038--791Chr10:8478261..8478285 (25 bp)
ATGGGCTGATTCGTTGGTCTGGACT
NONE
OsAffx.20548.1.S1_at--56--8131Chr10:8478281..8478305 (25 bp)
GGACTCCCTGATGAGTTGGCTACAT
NONE
Target Sequence 
GACATTCTGGAGTTACCGGCACTTATCAGAGGGAATTGTTTCGTTTGGCAGATGTTAAGCTCAATATGAGCTCTTCTTAC
CATCCCCAGACTGATGGGCAAACAGAGCGCCTTAATCAATGTTTGGAAGCCTTCCTGCACTGTACTGTCCATGCAGCTCC
TTCTAAGTGGTCCCAATGGTTGGCTCAAGCTCAACATTGGTACAACACCTCTTACCATAGTGCTTTGGATAAGACTCCCT
TTGAGCGTGTGGGAGCAGTTGCTTATCGTCTTGACTTACCGGCTGGCTCTCATGTTCATCCAGTGGTTCATGTGTCTCTT
CTGAAGAAGGCAGTCAAACCAGACATTCAGGTGAGTTCTGATATTCCTCAGCATTGCTTCATTGACAATGTAGAGCTTAC
TCCTGTCGCAGTTCTTCGTCCACAATTGATCAAGCGAGGCAAATCTGTTGTACCGTATGGGCTGATTCGTTGGTCTGGAC
TCCCTGATGAGTTGGCTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis