Browse Element(s) Details


OsAffx.20631.1.S1_x_at

Description gb:NM_195335.1
DB_XREF= gi:37532029
TID=OsAffx.20631.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0034E15.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g264107/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g260207/11hypothetical protein
LOC_Os11g342903/11retrotransposon protein, putative, unclassified
LOC_Os05g447402/11transposon protein, putative, Mutator sub-class
LOC_Os11g220102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g080602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g271202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g011802/11retrotransposon protein, putative, unclassified
LOC_Os11g387202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g290702/11retrotransposon protein, putative, unclassified
LOC_Os06g484301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g451741/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26360OsAffx.22699.1.S1_x_at3/117+15146798..15151907retrotransposon protein, putative, unclassified
LOC_Os07g26360OsAffx.940.1.S1_x_at1/117+15146798..15151907retrotransposon protein, putative, unclassified
LOC_Os07g26370OsAffx.13786.1.S1_x_at2/117+15154043..15155218hypothetical protein
LOC_Os07g26370OsAffx.18275.1.S1_x_at1/117+15154043..15155218hypothetical protein
LOC_Os07g26380NANA7+15157949..15158803transposon protein, putative, unclassified
LOC_Os07g26390NANA7+15162714..15167237retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26400NANA7+15167486..15169442retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26410OsAffx.20631.1.S1_x_at7/117+15171598..15176176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26410Os.33601.3.S1_x_at3/117+15171598..15176176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26410Os.32823.1.S1_x_at1/117+15171598..15176176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26410Os.49936.2.A1_at1/117+15171598..15176176retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26420OsAffx.28597.1.S1_at11/117+15182886..15185609hypothetical protein
LOC_Os07g26420Os.51832.1.S1_at1/117+15182886..15185609hypothetical protein
LOC_Os07g26430OsAffx.28598.1.S1_x_at11/117+15190749..15198953NB-ARC domain containing protein
LOC_Os07g26430OsAffx.28598.2.S1_x_at10/117+15190749..15198953NB-ARC domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20631.1.S1_x_at--52--7651Chr04:34631..34923 (25 bp)
GGGAGCAGCGGCATCCTTGACGGCA
NONE
OsAffx.20631.1.S1_x_at--641--8072Chr12:24714750..24715038 (25 bp)
GGAGCAGCGGCATCCTTGACGGCAG
NONE
OsAffx.20631.1.S1_x_at--835--5935Chr12:24714751..24715039 (25 bp)
GAGCAGCGGCATCCTTGACGGCAGC
NONE
OsAffx.20631.1.S1_x_at--522--43759Chr12:17208591..17208631 (25 bp)
CCAACTTCTTCGAGACATCTTCAAC
LOC_Os12g29070
OsAffx.20631.1.S1_x_at--556--32567Chr12:17208592..17208632 (25 bp)
CAACTTCTTCGAGACATCTTCAACT
LOC_Os12g29070
OsAffx.20631.1.S1_x_at--89--25314Chr12:17247997..17248036 (24 bp)
AACTTCTTCGAGACATCTTCAACTG
NONE
OsAffx.20631.1.S1_x_at--368--20512Chr11:12999177..12999201 (25 bp)
ACTTCTTCGAGACATCTTCAACTGA
NONE
OsAffx.20631.1.S1_x_at--189--36514Chr11:12999178..12999202 (25 bp)
CTTCTTCGAGACATCTTCAACTGAG
NONE
OsAffx.20631.1.S1_x_at--1011--105564Chr12:16184485..16184508 (24 bp)
TTCTTCGAGACATCTTCAACTGAGA
NONE
OsAffx.20631.1.S1_x_at--527--95784Chr12:16184485..16184508 (24 bp)
TCTTCGAGACATCTTCAACTGAGAG
NONE
OsAffx.20631.1.S1_x_at--884--36327Chr10:6357394..6357418 (25 bp)
CTTCGAGACATCTTCAACTGAGAGG
NONE
Target Sequence 
GGGAGCAGCGGCATCCTTGACGGCAGCGACGAAACCAACTTCTTCGAGACATCTTCAACTGAGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20631.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis