Browse Element(s) Details


OsAffx.20707.2.S1_x_at

Description tigr:9638.m01033
TID=OsAffx.20707.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative ethylene-inducible protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1152011/11pyridoxin biosynthesis protein ER1, putative
LOC_Os05g187802/11Rpp14 family protein, expressed
LOC_Os09g342601/11hypothetical protein
LOC_Os07g050201/11expressed protein
LOC_Os01g598191/11Glycosyl hydrolase family 1 protein, expressed
LOC_Os10g089601/11pyridoxin biosynthesis protein ER1, putative
LOC_Os01g392801/11pyridoxin biosynthesis protein ER1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g11480OsAffx.20646.1.S1_at11/1110+6126694..6127385hypothetical protein
LOC_Os10g11500Os.9421.1.S1_at11/1110+6135266..6135958Pathogenesis-related protein PRB1-2 precursor, putative, expressed
LOC_Os10g11500OsAffx.28437.1.S1_s_at1/1110+6135266..6135958Pathogenesis-related protein PRB1-2 precursor, putative, expressed
LOC_Os10g11506OsAffx.28661.1.S1_x_at2/1110+6138887..6141844retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11512NANA10+6148916..6149151hypothetical protein
LOC_Os10g11520OsAffx.20707.2.S1_x_at11/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11520OsAffx.20707.2.S1_at11/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11520Os.36435.2.S1_x_at5/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11520OsAffx.20707.1.S1_x_at1/1110+6150413..6150925pyridoxin biosynthesis protein ER1, putative
LOC_Os10g11530OsAffx.20644.1.S1_at11/1110+6151554..6153775hypothetical protein
LOC_Os10g11540OsAffx.8391.1.S1_at9/1110+6156216..6157956transposon protein, putative, unclassified
LOC_Os10g11540OsAffx.32036.1.S1_at1/1110+6156216..6157956transposon protein, putative, unclassified
LOC_Os10g11550NANA10+6159467..6159940hypothetical protein
LOC_Os10g11560Os.24831.1.S1_x_at8/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11560Os.24831.3.S1_x_at6/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11560Os.24831.3.S1_s_at6/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11560Os.55127.1.S1_at1/1110+6162504..6163105retrotransposon protein, putative, unclassified
LOC_Os10g11570OsAffx.20020.1.S1_x_at1/1110+6166843..6168586hypothetical protein
LOC_Os10g11580Os.16301.1.S1_at11/1110+6169665..6170947Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os10g11590OsAffx.20641.1.S1_at11/1110+6174358..6175232hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0008033biological_processtRNA processing
GO:0008615biological_processpyridoxine biosynthesis
GO:0042819biological_processvitamin B6 biosynthesis
GO:0005829cellular_componentcytosol
GO:0005886cellular_componentplasma membrane
GO:0012505cellular_componentendomembrane system
GO:0004526molecular_functionribonuclease P activity
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20707.2.S1_x_at--139--9953Chr10:6150826..6150850 (25 bp)
TACGACCTCGTCATGCAGACCAAGC
LOC_Os10g11520
OsAffx.20707.2.S1_x_at--517--3931Chr10:6150701..6150725 (25 bp)
CGGCTCGAGCATCTTCAAGAGTGGT
LOC_Os10g11520
OsAffx.20707.2.S1_x_at--422--1531Chr10:6150694..6150718 (25 bp)
AGCATCTTCAAGAGTGGTGACCACG
LOC_Os10g11520
OsAffx.20707.2.S1_x_at--213--9731Chr10:6150687..6150711 (25 bp)
TCAAGAGTGGTGACCACGCGCGCCA
LOC_Os10g11520
OsAffx.20707.2.S1_x_at--839--1331Chr10:6150684..6150708 (25 bp)
AGAGTGGTGACCACGCGCGCCACGC
LOC_Os10g11520
OsAffx.20707.2.S1_x_at--868--4531Chr10:6150661..6150685 (25 bp)
GCCCGCACCATCGTGCAGGCGATCA
LOC_Os10g11520
OsAffx.20707.2.S1_x_at--543--6431Chr10:6150641..6150665 (25 bp)
GATCACCCACTGCAGGTCGTTGCGT
LOC_Os10g11520
OsAffx.20707.2.S1_x_at--904--1571Chr10:6150567..6150591 (25 bp)
AGCTCTGCCCGGTGTGCCGTGACAG
LOC_Os10g11520
OsAffx.20707.2.S1_x_at--943--4191Chr10:6150560..6150584 (25 bp)
CCCGGTGTGCCGTGACAGAGAAAGA
LOC_Os10g11520
OsAffx.20707.2.S1_x_at--416--5615Chr03:4613457..4613489 (25 bp)
GACAAGTGGGCAAATTTGTCTTTAA
NONE
OsAffx.20707.2.S1_x_at--556--35712Chr11:21110843..21110937 (25 bp)
CTTTAACCAAAGTTTCTCTCTCCAT
NONE
Target Sequence 
TACGACCTCGTCATGCAGACCAAGCAGCTGGGCCGCCTCCCCGTCGTGCTGTTCGCGGCCGGCGGCGTCGCCACCCCCGC
CGACGCCGCCCTCATGATGCAGCTCGGTTGCGACGGCATCTTCGTCGGCTCGAGCATCTTCAAGAGTGGTGACCACGCGC
GCCACGCCCGCACCATCGTGCAGGCGATCACCCACTGCAGGTCGTTGCGTCCAAGCACGCTGCCGCCTCGTCGTCCTCGC
TGGCACACCTTCGCCGTGGAGCTCTGCCCGGTGTGCCGTGACAGAGAAAGAGAGGAAGAGATGAACGGAGAGAAAGAGAG
GAAGAAGAAGAACGGAGAAAGAGAGATTGACAAGTGGGCAAATTTGTCTTTAACCAAAGTTTCTCTCTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20707.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis