Browse Element(s) Details


OsAffx.20742.1.S1_at

Description tigr:9638.m00522
TID=OsAffx.20742.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative wall-associated protein kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0609011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06050Os.45161.1.A1_x_at1/1110+3057737..3060528retrotransposon protein, putative, unclassified
LOC_Os10g06070OsAffx.20604.2.S1_at11/1110+3064240..3066150retrotransposon protein, putative, unclassified
LOC_Os10g06080OsAffx.30311.1.S1_at10/1110+3068712..3069646hypothetical protein
LOC_Os10g06090OsAffx.20742.1.S1_at11/1110+3074744..3081593Protein kinase domain containing protein
LOC_Os10g06100OsAffx.20743.1.S1_at11/1110+3089631..3091177retrotransposon protein, putative, unclassified
LOC_Os10g06110OsAffx.8508.1.S1_at11/1110+3094723..3097486retrotransposon protein, putative, unclassified
LOC_Os10g06130Os.38047.1.S1_at11/1110+3097981..3103021RNA recognition motif family protein, expressed
LOC_Os10g06130Os.38047.2.S1_x_at11/1110+3097981..3103021RNA recognition motif family protein, expressed
LOC_Os10g06140OsAffx.20742.2.S1_x_at11/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.20742.3.S1_x_at7/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.20742.4.S1_x_at5/1110+3106167..3111329Protein kinase domain containing protein, expressed
LOC_Os10g06140OsAffx.29386.2.S1_at1/1110+3106167..3111329Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20742.1.S1_at--394--2191Chr10:3081019..3081043 (25 bp)
ACAAGTTCGTCCCTAAGATCTCAGA
LOC_Os10g06090
OsAffx.20742.1.S1_at--405--9791Chr10:3081131..3081155 (25 bp)
TAAGACTGGTCGTTTAACGCAGAAA
LOC_Os10g06090
OsAffx.20742.1.S1_at--504--7751Chr10:3081174..3081198 (25 bp)
GGTGTTGTATTGCTAGAGCTCATTA
LOC_Os10g06090
OsAffx.20742.1.S1_at--205--871Chr10:3081217..3081241 (25 bp)
ATGGCGAGAACTTTAGCCTCATCAT
LOC_Os10g06090
OsAffx.20742.1.S1_at--84--1671Chr10:3081231..3081255 (25 bp)
AGCCTCATCATCGAGTTCCAGAAGG
LOC_Os10g06090
OsAffx.20742.1.S1_at--196--5291Chr10:3081251..3081275 (25 bp)
GAAGGCCTATGATGAAGTACACAGT
LOC_Os10g06090
OsAffx.20742.1.S1_at--642--2071Chr10:3081410..3081434 (25 bp)
ACTTGTGATGTTGCGAAGAGCCAGA
LOC_Os10g06090
OsAffx.20742.1.S1_at--115--3131Chr10:3081456..3081480 (25 bp)
AATTTGAGTCCTAGACACCATGAGG
LOC_Os10g06090
OsAffx.20742.1.S1_at--3--10051Chr10:3081485..3081509 (25 bp)
TAGTATTGAAACAACTCCTACGAGT
LOC_Os10g06090
OsAffx.20742.1.S1_at--135--4311Chr10:3081501..3081525 (25 bp)
CCTACGAGTTTTGGTGCTGATTTTA
LOC_Os10g06090
OsAffx.20742.1.S1_at--255--3111Chr10:3081531..3081555 (25 bp)
AATAGTAGTGTGAGTCTTTCTGCAA
LOC_Os10g06090
Target Sequence 
ACAAGTTCGTCCCTAAGATCTCAGACTTTGGGACATCCAAGCTTCTTACAGTAGATAAAGACTTCACCATGTTTGTTGTT
GGGAGCATGGGATACATAGACCCAATATTCCATAAGACTGGTCGTTTAACGCAGAAAAGTGATGTTTATAGTTTTGGTGT
TGTATTGCTAGAGCTCATTAGTAGAAAGCCAACTATATATGGCGAGAACTTTAGCCTCATCATCGAGTTCCAGAAGGCCT
ATGATGAAGTACACAGTGGGAGGGCAATGTTTGATAAGGAGATCGCGGTGGAAGAAGATATCTTTATCTTGGAAGAAATT
GGTAAGTTGGCAATGGAGTGTCTAAAAGAAAAGGTTGAAGAACGACCTGATATGAAGGAAGTAGCAGAACGACTTGTGAT
GTTGCGAAGAGCCAGAAAGCATGGACAAGGAAGCTATAATTTGAGTCCTAGACACCATGAGGAGATTAGTATTGAAACAA
CTCCTACGAGTTTTGGTGCTGATTTTAGCACAAATAGTAGTGTGAGTCTTTCTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20742.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis