Browse Element(s) Details


OsAffx.20742.4.S1_x_at

Description gb:NM_194882.1
DB_XREF= gi:37531123
TID=OsAffx.20742.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNAa0028C16.4), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0620011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g060309/11Protein kinase domain containing protein
LOC_Os10g061405/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g06170NANA10+3138989..3145647retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06180OsAffx.20689.1.S1_x_at2/1110+3150279..3150719hypothetical protein
LOC_Os10g06180OsAffx.20673.1.S1_x_at1/1110+3150279..3150719hypothetical protein
LOC_Os10g06180OsAffx.20695.1.S1_x_at1/1110+3150279..3150719hypothetical protein
LOC_Os10g06190OsAffx.20689.1.S1_x_at1/1110+3154484..3155801transposon protein, putative, unclassified
LOC_Os10g06200OsAffx.20742.4.S1_x_at11/1110+3161978..3169245retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06200OsAffx.29386.2.S1_at1/1110+3161978..3169245retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06210NANA10+3172470..3173890hypothetical protein
LOC_Os10g06220NANA10+3176345..3177986retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06230NANA10+3178469..3182435retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06240Os.46314.2.S1_x_at4/1110+3184877..3187834transposon protein, putative, unclassified
LOC_Os10g06240OsAffx.32036.1.S1_at1/1110+3184877..3187834transposon protein, putative, unclassified
LOC_Os10g06240Os.47114.1.S1_x_at1/1110+3184877..3187834transposon protein, putative, unclassified
LOC_Os10g06250OsAffx.20673.1.S1_x_at2/1110+3189991..3191743retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06250Os.27691.1.S1_x_at1/1110+3189991..3191743retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06250OsAffx.20695.1.S1_x_at1/1110+3189991..3191743retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06250OsAffx.30496.1.S1_x_at1/1110+3189991..3191743retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g06260OsAffx.31869.3.S1_s_at11/1110+3192439..3193539retrotransposon protein, putative, unclassified
LOC_Os10g06260OsAffx.31869.3.S1_x_at11/1110+3192439..3193539retrotransposon protein, putative, unclassified
LOC_Os10g06260OsAffx.31869.3.S1_at8/1110+3192439..3193539retrotransposon protein, putative, unclassified
LOC_Os10g06260OsAffx.31869.5.S1_x_at4/1110+3192439..3193539retrotransposon protein, putative, unclassified
LOC_Os10g06260OsAffx.31869.4.S1_x_at3/1110+3192439..3193539retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20742.4.S1_x_at--663--2573Chr10:3045918..3045942 (25 bp)
AACGGTCCCGGATACTACTGCAAGT
LOC_Os10g06030
OsAffx.20742.4.S1_x_at--331--9713Chr10:3047599..3047623 (25 bp)
TCAACGAGTGTGATGTGTCCAACAA
LOC_Os10g06030
OsAffx.20742.4.S1_x_at--362--5372Chr10:3047624..3047648 (25 bp)
GAAGAAATATCCCTGCTACGGCGTC
LOC_Os10g06030
OsAffx.20742.4.S1_x_at--553--9932Chr10:3047640..3047664 (25 bp)
TACGGCGTCTGCAACAACATCCCAG
LOC_Os10g06030
OsAffx.20742.4.S1_x_at--142--712Chr10:3047671..3047695 (25 bp)
ATGAGTGCCACTGCCGTGTAGGATA
LOC_Os10g06030
OsAffx.20742.4.S1_x_at--177--1733Chr10:3047695..3047719 (25 bp)
ACCAGTGGAGTGGTGAAGGCCCCAA
LOC_Os10g06030
OsAffx.20742.4.S1_x_at--447--2953Chr10:3047710..3047734 (25 bp)
AAGGCCCCAAGAAACAAGAGTGCAG
LOC_Os10g06030
OsAffx.20742.4.S1_x_at--451--6112Chr10:3047727..3047751 (25 bp)
GAGTGCAGCGCAAAATTCCCTCTTG
LOC_Os10g06030
OsAffx.20742.4.S1_x_at--580--10733Chr10:3047749..3047769 (21 bp)
TTGCAGCAAGGCTTGCCCTTGTGAT
LOC_Os10g06030
OsAffx.20742.4.S1_x_at--167--5672Chr10:3162101..3162125 (25 bp)
GACTCTTGAAGACAATACTACGGTT
LOC_Os10g06200
OsAffx.20742.4.S1_x_at--1104--3711Chr10:3162084..3162108 (25 bp)
CTACGGTTGCAGTGAAGACGTCAAT
LOC_Os10g06200
Target Sequence 
AACGGTCCCGGATACTACTGCAAGTGCAAGCAAGGTTACGAGGGTAACCCCTACGACAAGGACCAAGGTTGCAAGGACAT
CAACGAGTGTGATGTGTCCAACAAGAAGAAATATCCCTGCTACGGCGTCTGCAACAACATCCCAGGGGATTATGAGTGCC
ACTGCCGTGTAGGATACCAGTGGAGTGGTGAAGGCCCCAAGAAACAAGAGTGCAGCGCAAAATTCCCTCTTGCAGCAAGG
CTTGCCCTTGTGATGCACCAAAAGCGAAAAATGAATGAATATTTCAAAAAGAATGGTGGTTCAGTGCTACAGAAAGTGGA
CAATATCAAGATTTTCACCAAAGATGAGCTAAAGAAAATCACAAAGAATAATTCAGAAGTTCTTGGTCAAGGAAGCTTTG
GTAAGGTGTACAAAGAGACTCTTGAAGACAATACTACGGTTGCAGTGAAGACGTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20742.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis