Browse Element(s) Details


OsAffx.20749.1.S1_at

Description tigr:9638.m00471
TID=OsAffx.20749.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0559011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05560OsAffx.30302.1.S1_at10/1110+2744761..2746068hypothetical protein
LOC_Os10g05560Os.5212.1.S1_at1/1110+2744761..2746068hypothetical protein
LOC_Os10g05570NANA10+2747754..2748620leucine-rich repeat family protein, putative
LOC_Os10g05580OsAffx.6583.1.S1_at11/1110+2757183..2758690hypothetical protein
LOC_Os10g05590OsAffx.20749.1.S1_at11/1110+2764618..2767273F-box domain containing protein
LOC_Os10g05600Os.56354.1.S1_at10/1110+2778783..2780822Thaumatin family protein, expressed
LOC_Os10g05610OsAffx.6584.1.S1_at11/1110+2786076..2786484hypothetical protein
LOC_Os10g05620OsAffx.8513.1.S1_s_at11/1110+2788683..2791653transposon protein, putative, unclassified
LOC_Os10g05620OsAffx.8513.2.S1_at6/1110+2788683..2791653transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20749.1.S1_at--1089--9291Chr10:2766712..2766736 (25 bp)
TCCGCCTGCCTCTATTCGTCGGAGA
LOC_Os10g05590
OsAffx.20749.1.S1_at--826--1711Chr10:2766372..2766396 (25 bp)
ACCAGCAGCTGGGTGCTTCTCAAGA
LOC_Os10g05590
OsAffx.20749.1.S1_at--239--4911Chr10:2766358..2766382 (25 bp)
GCTTCTCAAGAGCATTGACCTCGAC
LOC_Os10g05590
OsAffx.20749.1.S1_at--943--4091Chr10:2766337..2766361 (25 bp)
CGACGTGTTCGCTCCAATGCCATTG
LOC_Os10g05590
OsAffx.20749.1.S1_at--205--3031Chr10:2766322..2766346 (25 bp)
AATGCCATTGCCATGCGCAGGTGGG
LOC_Os10g05590
OsAffx.20749.1.S1_at--1060--3931Chr10:2766297..2766321 (25 bp)
CGGGTGATTCTGGTGCCGCCTGTCC
LOC_Os10g05590
OsAffx.20749.1.S1_at--904--5311Chr10:2766255..2766279 (25 bp)
GAAGGTGGCATCTCTGCGTTCATAT
LOC_Os10g05590
OsAffx.20749.1.S1_at--1034--8271Chr10:2766249..2766273 (25 bp)
GGCATCTCTGCGTTCATATGGACAA
LOC_Os10g05590
OsAffx.20749.1.S1_at--602--7731Chr10:2766157..2766181 (25 bp)
GGTGGACTTTGTTTATCCCTATTCA
LOC_Os10g05590
OsAffx.20749.1.S1_at--123--6831Chr10:2766147..2766171 (25 bp)
GTTTATCCCTATTCAAGCGTCTATG
LOC_Os10g05590
OsAffx.20749.1.S1_at--393--10511Chr10:2766139..2766160 (22 bp)
TTCAAGCGTCTATGTTGCAGGTGGA
LOC_Os10g05590
Target Sequence 
TCCGCCTGCCTCTATTCGTCGGAGACCGCCGCGTGGGGCAGGCTGATCACCGCGGGGACAGCGCGCTGCGGCGACGTGGG
CAAGAAGCCCAGCGCGCTCGCCGGGGACGCGCTCTACTGGGCGCTCGACGACGGCCGACGGCGACATCCTCGAGCTCGAC
ATGGGCAAGGAGACCCTCGCCGTGGTCGAGCCGCCGCCGCCCGACGCTCTGGCTCTCTGTGGGCGCGGGAGGCTGGCGGC
GCCGATGGCGTCGCAAGCACCAGCAGCTGGGTGCTTCTCAAGAGCATTGACCTCGACGTGTTCGCTCCAATGCCATTGCC
ATGCGCAGGTGGGCGGGTGATTCTGGTGCCGCCTGTCCGGCTGCTCGGGGTTGACGAAGGTGGCATCTCTGCGTTCATAT
GGACAATTGAGGGGATCTTCATGCTCCATCTTGAAGATGAGATGCTGATGAAGAAGGTGGCTGCTTCCAGAGTGGTGGAC
TTTGTTTATCCCTATTCAAGCGTCTATGTTGCAGGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20749.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis