Browse Element(s) Details


OsAffx.20798.1.S1_x_at

Description tigr:9638.m00124
TID=OsAffx.20798.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Putative LeOPT1 - oligopeptide transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g022109/11POT family protein
LOC_Os10g022401/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02160NANA10+720799..723377retrotransposon protein, putative, unclassified
LOC_Os10g02170NANA10+723804..726822retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g02180NANA10+733549..735851retrotransposon protein, putative, unclassified
LOC_Os10g02190NANA10+736200..736730retrotransposon protein, putative, unclassified
LOC_Os10g02200OsAffx.18086.1.S1_x_at11/1110+738439..738985hypothetical protein
LOC_Os10g02210OsAffx.20798.1.S1_x_at9/1110+745328..749864POT family protein
LOC_Os10g02210OsAffx.20798.1.S1_at5/1110+745328..749864POT family protein
LOC_Os10g02210OsAffx.30217.1.S1_x_at2/1110+745328..749864POT family protein
LOC_Os10g02210Os.46546.2.S1_x_at1/1110+745328..749864POT family protein
LOC_Os10g02220Os.4008.1.S1_a_at11/1110+755833..760488Major Facilitator Superfamily protein, expressed
LOC_Os10g02220Os.4008.2.S1_x_at11/1110+755833..760488Major Facilitator Superfamily protein, expressed
LOC_Os10g02230Os.4009.1.S1_at11/1110+766451..767947hypothetical protein
LOC_Os10g02240Os.46739.1.A1_x_at8/1110+772270..775156POT family protein, expressed
LOC_Os10g02240OsAffx.20798.1.S1_x_at1/1110+772270..775156POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20798.1.S1_x_at--308--1831Chr10:746645..746669 (25 bp)
ACGCCGTGCTGGTGCCACTGGCACG
LOC_Os10g02210
OsAffx.20798.1.S1_x_at--1131--4951Chr10:746480..746504 (25 bp)
GCATAATGTGGCAGGCGCCGTGCTA
LOC_Os10g02210
OsAffx.20798.1.S1_x_at--986--4991Chr10:746444..746468 (25 bp)
GCATGGCGGAGGTGTTCACCAGCAT
LOC_Os10g02210
OsAffx.20798.1.S1_x_at--701--7752Chr10:746434..746458 (25 bp)
GGTGTTCACCAGCATCGGCATGCTG
LOC_Os10g02210
OsAffx.20798.1.S1_x_at--585--611Chr10:746415..746439 (25 bp)
ATGCTGGAGTTCTTCTACGAGAGGT
LOC_Os10g02210
OsAffx.20798.1.S1_x_at--203--1231Chr10:746408..746432 (25 bp)
AGTTCTTCTACGAGAGGTCGCCGGG
LOC_Os10g02210
OsAffx.20798.1.S1_x_at--578--7691Chr10:746385..746409 (25 bp)
GGGTCCATGAAGAGCCTCGGCACGT
LOC_Os10g02210
OsAffx.20798.1.S1_x_at--578--7231Chr10:746343..746367 (25 bp)
GTCGCGACGGCTAACTACCTCAACT
LOC_Os10g02210
OsAffx.20798.1.S1_x_at--1051--4691Chr10:746276..746300 (25 bp)
GCGGCGCTGGGTGGATCCCGGACAA
LOC_Os10g02210
OsAffx.20798.1.S1_x_at--914--3891NONE
CTGGATGATGGCTCTTGTCCGGTCA
NONE
OsAffx.20798.1.S1_x_at--687--8871NONE
TGATGGCTCTTGTCCGGTCAGACTG
NONE
Target Sequence 
ACGCCGTGCTGGTGCCACTGGCACGGCGCGCCACCGGCAACGACCGGGGCCTCTCGCACCTGCAGCGCATCGGCGTCGGC
CTCGCGCTGTCCGCGGTGGCCATGGCGTACTCGGCGCAGGTGGAGAGGCGGCGACGGCGACCGGCGGCGGAGGAGGAGGC
GATGAGCATAATGTGGCAGGCGCCGTGCTACCTGGTGCTGGGCATGGCGGAGGTGTTCACCAGCATCGGCATGCTGGAGT
TCTTCTACGAGAGGTCGCCGGGGTCCATGAAGAGCCTCGGCACGTCGCTCGCGCACCTGGCCGTCGCGACGGCTAACTAC
CTCAACTCCGGCGTGCTCGGCGTGGTGGTGGCGGCCACGACGCGTGGCGGCGGCGCTGGGTGGATCCCGGACAACCTCGA
TGAGGGGCACCTTGACTACTTCTTCTGGATGATGGCTCTTGTCCGGTCAGACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20798.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis