Browse Element(s) Details


OsAffx.2083.1.S1_at

Description gb:NM_193968.1
DB_XREF= gi:34915019
GEN=P0458A05.15
TID=OsAffx.2083.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0458A05.15 (P0458A05.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g252906/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25260NANA1+14244589..14244816hypothetical protein
LOC_Os01g25270Os.40577.1.S1_at2/111+14246895..14249528PPR986-12, putative
LOC_Os01g25280Os.46023.1.S1_at10/111+14263227..14264668Salt stress-induced protein, putative, expressed
LOC_Os01g25290OsAffx.2083.1.S1_at6/111+14268430..14269491hypothetical protein
LOC_Os01g25300Os.52041.1.S1_at11/111+14272854..14274147expressed protein
LOC_Os01g25300Os.55341.1.S1_x_at11/111+14272854..14274147expressed protein
LOC_Os01g25320Os.33510.1.S2_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320Os.33510.1.S1_x_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320Os.33510.2.S1_s_at11/111+14274596..14285672TolA protein, expressed
LOC_Os01g25320OsAffx.11200.1.S1_at10/111+14274596..14285672TolA protein, expressed
LOC_Os01g25330Os.5428.2.S1_x_at11/111+14290640..14299172sacI homology domain-containing protein, putative, expressed
LOC_Os01g25330Os.5428.1.S1_at10/111+14290640..14299172sacI homology domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2083.1.S1_at--154--8651Chr01:14268469..14268493 (25 bp)
TGGGCCGCCCATTTGACCTACTATA
LOC_Os01g25290
OsAffx.2083.1.S1_at--947--4311NONE
CCATTTGACCTACTATAGCCGCTAC
NONE
OsAffx.2083.1.S1_at--597--10751NONE
TTGACCTACTATAGCCGCTACCCTT
NONE
OsAffx.2083.1.S1_at--155--811Chr01:14269210..14269234 (25 bp)
ATGGTCCTCCCTCTGAGTGTCGTGA
LOC_Os01g25290
OsAffx.2083.1.S1_at--53--7251Chr01:14269213..14269237 (25 bp)
GTCCTCCCTCTGAGTGTCGTGACCG
LOC_Os01g25290
OsAffx.2083.1.S1_at--865--10651Chr01:14269325..14269349 (25 bp)
TTCCTCCGCAAAACGGCGCCGTCAT
LOC_Os01g25290
OsAffx.2083.1.S1_at--191--4511Chr01:14269390..14269414 (25 bp)
GCCGACACTACGTGCAACACACTTT
LOC_Os01g25290
OsAffx.2083.1.S1_at--666--5631Chr01:14269393..14269417 (25 bp)
GACACTACGTGCAACACACTTTGCC
LOC_Os01g25290
OsAffx.2083.1.S1_at--723--4011Chr01:14269579..14269603 (25 bp)
CGTAGACAGGATGCGACTGTTGGTA
NONE
OsAffx.2083.1.S1_at--684--2112Chr12:16740440..16740922 (25 bp)
ACAGGATGCGACTGTTGGTATTTCT
NONE
OsAffx.2083.1.S1_at--798--3414Chr07:10557166..10557186 (21 bp)
CAGCAATAGCGCAGAAATACTTATG
NONE
Target Sequence 
TGGGCCGCCCATTTGACCTACTATAGCCGCTACCCTTCCTCCAACGCTGGTGCCACCATGGTCCTCCCTCTGAGTGTCGT
GACCGCCGCCACCCCCGACGCCGACACTGCGCGCCGCACCCGCCGCCCCGCCCCAACCCCACCCCCTGCACGCCAGCGCT
TCCACCGGAGCCTTCCTCCGCAAAACGGCGCCGTCATTGCCCTCCCTCTGAGTGTCACAACCGCCGCCTCCCGCGACGCC
GACACTACGTGCAACACACTTTGCCCCCTCCCTCCACACGCCATTGCTTCTGCCGCTCCCTTTCTCTGCACACCGNNNCN
NNNNNNNNCCNNNNNNNNNCGCGTAGACAGGATGCGACTGTTGGTATTTCTTAACGACATTACTAGAAATATAATTCCCA
GCAATAGCGCAGAAATACTTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis