Browse Element(s) Details

OsAffx.20927.1.S1_at

Description

tigr:9634.m03247
TID=OsAffx.20927.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g34564	8/11	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os05g20770	2/11	retrotransposon protein, putative, Ty3-gypsy subclass

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g34500	NA	NA	6	+	20076971..20079548	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34510	NA	NA	6	+	20080452..20083772	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34520	OsAffx.27929.1.S1_at	11/11	6	+	20084774..20085595	CAF1 family ribonuclease containing protein
LOC_Os06g34530	NA	NA	6	+	20087573..20088145	Zinc finger, C3HC4 type family protein
LOC_Os06g34540	NA	NA	6	+	20092407..20093057	hypothetical protein
LOC_Os06g34550	OsAffx.27931.2.S1_at	11/11	6	+	20093445..20093960	hypothetical protein
LOC_Os06g34550	OsAffx.27931.2.S1_x_at	11/11	6	+	20093445..20093960	hypothetical protein
LOC_Os06g34560	OsAffx.27942.1.S1_at	10/11	6	+	20097737..20099499	Zinc finger, C3HC4 type family protein
LOC_Os06g34564	OsAffx.20927.1.S1_x_at	9/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564	OsAffx.20927.1.S1_at	8/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564	OsAffx.17778.2.S1_at	2/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564	OsAffx.29316.1.S1_x_at	1/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564	OsAffx.14776.1.S1_x_at	1/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564	OsAffx.6537.1.S1_at	1/11	6	+	20101691..20103442	Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34570	OsAffx.27937.1.S1_at	11/11	6	+	20105011..20111110	hypothetical protein
LOC_Os06g34570	OsAffx.27937.2.S1_s_at	11/11	6	+	20105011..20111110	hypothetical protein
LOC_Os06g34570	OsAffx.17323.1.S1_at	1/11	6	+	20105011..20111110	hypothetical protein
LOC_Os06g34580	OsAffx.22699.1.S1_x_at	1/11	6	+	20111705..20116213	retrotransposon protein, putative, unclassified
LOC_Os06g34580	OsAffx.8201.1.S1_x_at	1/11	6	+	20111705..20116213	retrotransposon protein, putative, unclassified
LOC_Os06g34590	OsAffx.31829.1.S1_at	11/11	6	+	20117370..20119153	hypothetical protein
LOC_Os06g34600	OsAffx.15923.1.S1_at	1/11	6	+	20120528..20124292	hypothetical protein
LOC_Os06g34600	OsAffx.8794.1.S1_at	1/11	6	+	20120528..20124292	hypothetical protein
LOC_Os06g34610	NA	NA	6	+	20125202..20125871	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0005515	molecular_function	protein binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.20927.1.S1_at--1012--239	1	NONE	AAAAATTCGTCTCCAGGAAAGTCAG	NONE
OsAffx.20927.1.S1_at--537--315	1	NONE	AATTCGTCTCCAGGAAAGTCAGACA	NONE
OsAffx.20927.1.S1_at--208--941	1	NONE	TCGTCTCCAGGAAAGTCAGACATAA	NONE
OsAffx.20927.1.S1_at--704--711	1	Chr06:20101775..20101799 (25 bp)	GTCAGACATAAGAGCAGTCAAGCTA	LOC_Os06g34564
OsAffx.20927.1.S1_at--326--35	1	Chr06:20101768..20101792 (25 bp)	ATAAGAGCAGTCAAGCTAGATTTTC	LOC_Os06g34564
OsAffx.20927.1.S1_at--462--321	4	Chr12:26541802..26542064 (25 bp)	CAAGCTAGATTTTCAAGGCTTTGTC	NONE
OsAffx.20927.1.S1_at--93--505	5	Chr08:14367799..14367822 (24 bp)	GCAGACTTTGCACCTTCTCGATTAT	NONE
OsAffx.20927.1.S1_at--375--139	5	Chr08:14367801..14367822 (22 bp)	AGACTTTGCACCTTCTCGATTATCT	NONE
OsAffx.20927.1.S1_at--103--205	3	Chr12:26542069..26542309 (25 bp)	ACTTTGCACCTTCTCGATTATCTGA	NONE
OsAffx.20927.1.S1_at--818--1027	2	Chr03:19970588..19970885 (25 bp)	TTTGCACCTTCTCGATTATCTGAGA	NONE
OsAffx.20927.1.S1_at--927--903	2	Chr03:19970590..19970887 (25 bp)	TGCACCTTCTCGATTATCTGAGAAC	NONE

Target Sequence

AAAAATTCGTCTCCAGGAAAGTCAGACATAAGAGCAGTCAAGCTAGATTTTCAAGGCTTTGTCGCAGACTTTGCACCTTC
TCGATTATCTGAGAAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis