Browse Element(s) Details


OsAffx.2100.1.S1_at

Description tigr:9629.m02677
TID=OsAffx.2100.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2797011/11hypothetical protein
LOC_Os01g450101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27930OsAffx.31069.2.S1_x_at1/111+15938240..15941388retrotransposon protein, putative, unclassified
LOC_Os01g27940Os.1541.1.S1_at10/111+15945091..15951432Cyclin, N-terminal domain containing protein, expressed
LOC_Os01g27950Os.27691.2.S1_x_at2/111+15956712..15957898retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27950Os.27691.1.S1_x_at2/111+15956712..15957898retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27960NANA1+15958476..15961565retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g27970OsAffx.2100.1.S1_at11/111+15964530..15964832hypothetical protein
LOC_Os01g27980OsAffx.2101.1.S1_at11/111+15967184..15967504hypothetical protein
LOC_Os01g27990Os.21006.2.S1_at9/111+15971840..15976386NPL4 family protein, putative, expressed
LOC_Os01g27990Os.21006.1.S1_at9/111+15971840..15976386NPL4 family protein, putative, expressed
LOC_Os01g28000Os.46314.2.S1_x_at3/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.940.1.S1_x_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.4303.1.S1_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.22896.1.S1_x_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000Os.10731.2.A1_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.9762.1.S1_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.22699.1.S1_x_at1/111+15977171..15988206retrotransposon protein, putative, unclassified
LOC_Os01g28000OsAffx.11259.1.S1_at1/111+15977171..15988206retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2100.1.S1_at--851--3411Chr01:15964685..15964709 (25 bp)
CAGAAGCAACATAGGCACAGAGGAT
LOC_Os01g27970
OsAffx.2100.1.S1_at--452--10091Chr01:15964696..15964720 (25 bp)
TAGGCACAGAGGATGAACCAGCAAT
LOC_Os01g27970
OsAffx.2100.1.S1_at--296--7991Chr01:15964706..15964730 (25 bp)
GGATGAACCAGCAATGGAGAGAATT
LOC_Os01g27970
OsAffx.2100.1.S1_at--1068--10611Chr01:15964729..15964753 (25 bp)
TTCGTGGAGAGCCTATTCGTGTGTC
LOC_Os01g27970
OsAffx.2100.1.S1_at--786--8531Chr01:15964733..15964757 (25 bp)
TGGAGAGCCTATTCGTGTGTCGCTG
LOC_Os01g27970
OsAffx.2100.1.S1_at--957--1371Chr01:15964736..15964760 (25 bp)
AGAGCCTATTCGTGTGTCGCTGTCT
LOC_Os01g27970
OsAffx.2100.1.S1_at--420--111Chr01:15964743..15964767 (25 bp)
ATTCGTGTGTCGCTGTCTCGTCCTA
LOC_Os01g27970
OsAffx.2100.1.S1_at--206--7472Chr01:15964925..15964949 (25 bp)
GTGTGTCGCTGTCTCGTCCTAATAG
NONE
OsAffx.2100.1.S1_at--1130--4713Chr09:9345107..9345127 (21 bp)
GCTGTCTCGTCCTAATAGCGCAAGG
NONE
OsAffx.2100.1.S1_at--236--7173Chr09:9345109..9345134 (24 bp)
GTCTCGTCCTAATAGCGCAAGGAGA
NONE
OsAffx.2100.1.S1_at--737--6012Chr01:15964956..15964980 (25 bp)
GAGAGAGAGGATTCGCATCCGTTGC
NONE
Target Sequence 
CAGAAGCAACATAGGCACAGAGGATGAACCAGCAATGGAGAGAATTCGTGGAGAGCCTATTCGTGTGTCGCTGTCTCGTC
CTAATAGCGCAAGGAGAGAGAGGATTCGCATCCGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2100.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis