Browse Element(s) Details


OsAffx.21028.1.S1_at

Description gb:XM_353967.1
DB_XREF= gi:35189367
GEN=P0702F05.21
TID=OsAffx.21028.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g064209/11lactoylglutathione lyase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g06370Os.5158.1.S1_at10/116+2965770..2972191expressed protein
LOC_Os06g06380Os.33898.2.S1_x_at11/116+2972686..2978468NB-ARC domain containing protein, expressed
LOC_Os06g06380Os.33898.1.S1_at11/116+2972686..2978468NB-ARC domain containing protein, expressed
LOC_Os06g06390OsAffx.22584.1.S1_at11/116+2979427..2983290NB-ARC domain containing protein, expressed
LOC_Os06g06400Os.33082.1.S1_at11/116+2984134..2989868NB-ARC domain containing protein, expressed
LOC_Os06g06410Os.33206.1.S1_at10/116+2991047..2994595expressed protein
LOC_Os06g06420Os.32701.1.S1_at11/116+2994768..2996966lactoylglutathione lyase family protein, putative, expressed
LOC_Os06g06420OsAffx.21028.1.S1_at9/116+2994768..2996966lactoylglutathione lyase family protein, putative, expressed
LOC_Os06g06430Os.34705.1.S1_at11/116+2998149..2999425expressed protein
LOC_Os06g06440Os.27427.1.S1_at11/116+3000111..3008251multidrug-resistance associated protein 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21028.1.S1_at--1033--5951Chr06:2995993..2996017 (25 bp)
GAGAATTGAGATACTCAAGGCCTCA
LOC_Os06g06420
OsAffx.21028.1.S1_at--305--9891Chr06:2996004..2996028 (25 bp)
TACTCAAGGCCTCAAGGGATGATAT
LOC_Os06g06420
OsAffx.21028.1.S1_at--598--4451Chr06:2996012..2996036 (25 bp)
GCCTCAAGGGATGATATGGATACCA
LOC_Os06g06420
OsAffx.21028.1.S1_at--609--1071Chr06:2996018..2996042 (25 bp)
AGGGATGATATGGATACCACAATAT
LOC_Os06g06420
OsAffx.21028.1.S1_at--270--10111Chr06:2996026..2996050 (25 bp)
TATGGATACCACAATATACAACAAA
LOC_Os06g06420
OsAffx.21028.1.S1_at--603--9851Chr06:2996042..2996066 (25 bp)
TACAACAAAAAGTTCGCATGGCAAT
LOC_Os06g06420
OsAffx.21028.1.S1_at--255--6711Chr06:2996053..2996077 (25 bp)
GTTCGCATGGCAATTGGATCTCCTT
LOC_Os06g06420
OsAffx.21028.1.S1_at--560--9351Chr06:2996055..2996079 (25 bp)
TCGCATGGCAATTGGATCTCCTTGA
LOC_Os06g06420
OsAffx.21028.1.S1_at--413--851Chr06:2996059..2996082 (24 bp)
ATGGCAATTGGATCTCCTTGATGTT
LOC_Os06g06420
OsAffx.21028.1.S1_at--269--7971NONE
GGATCTCCTTGATGTTGCAGCCGTA
NONE
OsAffx.21028.1.S1_at--990--9491NONE
TCTCCTTGATGTTGCAGCCGTACGA
NONE
Target Sequence 
GAGAATTGAGATACTCAAGGCCTCAAGGGATGATATGGATACCACAATATACAACAAAAAGTTCGCATGGCAATTGGATC
TCCTTGATGTTGCAGCCGTACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21028.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis