Browse Element(s) Details


OsAffx.21042.1.S1_at

Description gb:XM_353921.1
DB_XREF= gi:35189275
TID=OsAffx.21042.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2247011/11hypothetical protein
LOC_Os08g251301/11enhancer of polycomb, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22430OsAffx.5954.4.S1_x_at5/117+12605062..12611889retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g22430OsAffx.5954.5.S1_x_at2/117+12605062..12611889retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g22430OsAffx.5954.2.S1_at1/117+12605062..12611889retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g22440OsAffx.22633.1.S1_at11/117+12615046..12616740retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22440Os.10779.1.S1_at1/117+12615046..12616740retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22450OsAffx.24947.2.S1_x_at2/117+12620951..12621528hypothetical protein
LOC_Os07g22450OsAffx.24947.2.S1_at1/117+12620951..12621528hypothetical protein
LOC_Os07g22460OsAffx.22631.1.S1_at11/117+12627098..12627685hypothetical protein
LOC_Os07g22470OsAffx.21042.1.S1_at11/117+12630712..12632412hypothetical protein
LOC_Os07g22480OsAffx.22629.1.S1_at11/117+12639753..12644850hypothetical protein
LOC_Os07g22480OsAffx.30013.5.S1_x_at1/117+12639753..12644850hypothetical protein
LOC_Os07g22494Os.33350.3.S1_x_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.3.S1_x_at11/117+12651670..12654761expressed protein
LOC_Os07g22494OsAffx.5404.1.S1_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.5530.2.S1_s_at11/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.2.S1_x_at8/117+12651670..12654761expressed protein
LOC_Os07g22494Os.33350.1.S1_x_at4/117+12651670..12654761expressed protein
LOC_Os07g22494Os.34819.2.S1_s_at4/117+12651670..12654761expressed protein
LOC_Os07g22494Os.5530.2.S1_x_at2/117+12651670..12654761expressed protein
LOC_Os07g22494Os.42141.1.S1_x_at1/117+12651670..12654761expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21042.1.S1_at--720--6491Chr07:12632243..12632263 (21 bp)
GTTCAGGATTGGCAAAGGGACAATT
LOC_Os07g22470
OsAffx.21042.1.S1_at--1092--7612Chr07:12632255..12632279 (25 bp)
GGGACAATTTTAAATGTTCCATCAG
LOC_Os07g22470
OsAffx.21042.1.S1_at--529--6691Chr07:12632270..12632294 (25 bp)
GTTCCATCAGAAGATTACGACTTGT
LOC_Os07g22470
OsAffx.21042.1.S1_at--311--3411Chr07:12632277..12632301 (25 bp)
CAGAAGATTACGACTTGTTTTGGAT
LOC_Os07g22470
OsAffx.21042.1.S1_at--939--2791Chr07:12632280..12632304 (25 bp)
AAGATTACGACTTGTTTTGGATGTA
LOC_Os07g22470
OsAffx.21042.1.S1_at--1037--7071Chr07:12632302..12632326 (25 bp)
GTAATTGATCCTAAATGTAATGTGT
LOC_Os07g22470
OsAffx.21042.1.S1_at--46--791Chr07:12632321..12632345 (25 bp)
ATGTGTTCAGTGAAACAGATCTTTG
LOC_Os07g22470
OsAffx.21042.1.S1_at--525--5531Chr07:12632332..12632356 (25 bp)
GAAACAGATCTTTGTATTACGAGTA
LOC_Os07g22470
OsAffx.21042.1.S1_at--172--6431Chr07:12632338..12632362 (25 bp)
GATCTTTGTATTACGAGTATTTACC
LOC_Os07g22470
OsAffx.21042.1.S1_at--726--8751Chr07:12632344..12632368 (25 bp)
TGTATTACGAGTATTTACCTTGGAA
LOC_Os07g22470
OsAffx.21042.1.S1_at--237--10471Chr07:12632358..12632382 (25 bp)
TTACCTTGGAAAACTTTGTTATGTG
LOC_Os07g22470
Target Sequence 
GTTCAGGATTGGCAAAGGGACAATTTTAAATGTTCCATCAGAAGATTACGACTTGTTTTGGATGTAATTGATCCTAAATG
TAATGTGTTCAGTGAAACAGATCTTTGTATTACGAGTATTTACCTTGGAAAACTTTGTTATGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21042.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis