Browse Element(s) Details


OsAffx.21182.3.S1_x_at

Description tigr:9632.m03071
TID=OsAffx.21182.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3223010/11hypothetical protein
LOC_Os05g250102/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g335202/11Ulp1 protease family, C-terminal catalytic domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32170OsAffx.26280.1.S1_at10/114+19105894..19106217hypothetical protein
LOC_Os04g32180OsAffx.3974.1.S1_at9/114+19107044..19109678hypothetical protein
LOC_Os04g32190OsAffx.14084.2.S1_x_at11/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32190OsAffx.14084.1.S1_x_at3/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32190OsAffx.14084.3.S1_at2/114+19112397..19114382Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein
LOC_Os04g32200OsAffx.26280.1.S1_at11/114+19116418..19116834hypothetical protein
LOC_Os04g32210OsAffx.14084.3.S1_at8/114+19118698..19120791hypothetical protein
LOC_Os04g32210OsAffx.14084.2.S1_x_at1/114+19118698..19120791hypothetical protein
LOC_Os04g32220OsAffx.14085.1.S1_at11/114+19124640..19127844hypothetical protein
LOC_Os04g32230OsAffx.21182.3.S1_at10/114+19130448..19132134hypothetical protein
LOC_Os04g32230OsAffx.21182.3.S1_x_at10/114+19130448..19132134hypothetical protein
LOC_Os04g32230OsAffx.21182.2.S1_x_at1/114+19130448..19132134hypothetical protein
LOC_Os04g32240OsAffx.14087.1.S1_at11/114+19133328..19134860expressed protein
LOC_Os04g32250OsAffx.14084.4.S1_at11/114+19136087..19139757hypothetical protein
LOC_Os04g32250OsAffx.14084.2.S1_x_at3/114+19136087..19139757hypothetical protein
LOC_Os04g32250OsAffx.14084.1.S1_x_at2/114+19136087..19139757hypothetical protein
LOC_Os04g32260OsAffx.14084.5.S1_x_at11/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.5.S1_at11/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.2.S1_x_at3/114+19141693..19144833hypothetical protein
LOC_Os04g32260OsAffx.14084.1.S1_x_at1/114+19141693..19144833hypothetical protein
LOC_Os04g32270Os.15712.2.S1_at11/114+19147120..19151214ubiquitin family protein, putative, expressed
LOC_Os04g32270Os.15712.1.S1_x_at11/114+19147120..19151214ubiquitin family protein, putative, expressed
LOC_Os04g32270Os.15712.1.S1_a_at11/114+19147120..19151214ubiquitin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21182.3.S1_x_at--176--9014Chr05:14395447..14395470 (24 bp)
TGAATAATATTCGAGCCAACAAACC
LOC_Os05g25010
OsAffx.21182.3.S1_x_at--635--7611NONE
GGGAACGCAACTTTGGTACTGGGAG
NONE
OsAffx.21182.3.S1_x_at--345--2571Chr04:19130847..19131152 (25 bp)
AACTGTCATTAGTGGAACATCTTTC
LOC_Os04g32230
OsAffx.21182.3.S1_x_at--907--7131Chr04:19130843..19131148 (25 bp)
GTCATTAGTGGAACATCTTTCTATA
LOC_Os04g32230
OsAffx.21182.3.S1_x_at--80--10432Chr05:14398001..14398308 (25 bp)
TTAGTGGAACATCTTTCTATAGGTC
LOC_Os05g25010
OsAffx.21182.3.S1_x_at--745--3692Chr04:19130823..19130847 (25 bp)
CTATAGGTCTTCATGTGGTCTCTTC
LOC_Os04g32230
OsAffx.21182.3.S1_x_at--1000--7491Chr04:19130809..19130833 (25 bp)
GTGGTCTCTTCATGCTGAAGTGTAT
LOC_Os04g32230
OsAffx.21182.3.S1_x_at--1033--2191Chr04:19130519..19130780 (25 bp)
ACAAAATTTAAGCAGATCTTCAAAC
LOC_Os04g32230
OsAffx.21182.3.S1_x_at--1059--5031Chr04:19130508..19130531 (24 bp)
GCAGATCTTCAAACGCAAGTTAGCG
LOC_Os04g32230
OsAffx.21182.3.S1_x_at--1000--9551Chr04:19130503..19130527 (25 bp)
TCTTCAAACGCAAGTTAGCGGCCAT
LOC_Os04g32230
OsAffx.21182.3.S1_x_at--429--2371Chr04:19130498..19130522 (25 bp)
AAACGCAAGTTAGCGGCCATTTTGG
LOC_Os04g32230
Target Sequence 
TGAATAATATTCGAGCCAACAAACCGGGAACGCAACTTTGGTACTGGGAGAAGTTTCGAGTGAGTCATATAGATCCTTCC
ACCGCACGTGTCAGACCACTGATACAATACTGGGATGAGAAGAAGGCTAGAAAGCGTGAAAAAATCATGTATGGAGTAAT
TCGTGTCCTAGCACCGGGAAACAGGCACGAAACTGTCATTAGTGGAACATCTTTCTATAGGTCTTCATGTGGTCTCTTCA
TGCTGAAGTGTATGGAACACTGGAATGGATCAAAGTTAACCACAAAATTTAAGCAGATCTTCAAACGCAAGTTAGCGGCC
ATTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21182.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis