Browse Element(s) Details


OsAffx.21285.1.S1_at

Description gb:NM_193204.1
DB_XREF= gi:34913491
GEN=OJ1619_F12.14
TID=OsAffx.21285.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative glucan synthase (OJ1619_F12.14), mRNA.
PROD=putative glucan synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g203843/11SacI homology domain containing protein, expressed
LOC_Os08g128901/11expressed protein
LOC_Os04g317901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g20350OsAffx.7164.1.S1_at11/1111+11749749..11750090hypothetical protein
LOC_Os11g20360Os.52156.1.S1_at11/1111+11752798..11758127Leucine Rich Repeat family protein, expressed
LOC_Os11g20360Os.52156.1.S2_at10/1111+11752798..11758127Leucine Rich Repeat family protein, expressed
LOC_Os11g20370OsAffx.31074.1.S1_at11/1111+11761586..11762300hypothetical protein
LOC_Os11g20384Os.49833.1.S1_at11/1111+11763776..11779422SacI homology domain containing protein, expressed
LOC_Os11g20384Os.49833.1.S2_at10/1111+11763776..11779422SacI homology domain containing protein, expressed
LOC_Os11g20384OsAffx.21285.1.S1_at3/1111+11763776..11779422SacI homology domain containing protein, expressed
LOC_Os11g20400OsAffx.31892.5.S1_at3/1111+11786286..11790393retrotransposon protein, putative, unclassified, expressed
LOC_Os11g20400OsAffx.31892.1.S1_x_at2/1111+11786286..11790393retrotransposon protein, putative, unclassified, expressed
LOC_Os11g20400OsAffx.31892.5.S1_x_at2/1111+11786286..11790393retrotransposon protein, putative, unclassified, expressed
LOC_Os11g20410NANA11+11790897..11791385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20420NANA11+11792062..11794570retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g20430OsAffx.18959.1.S1_at11/1111+11795183..11798247hypothetical protein
LOC_Os11g20430OsAffx.13772.1.S1_at1/1111+11795183..11798247hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0009826biological_processunidimensional cell growth
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005794cellular_componentGolgi apparatus
GO:0004439molecular_functionphosphoinositide 5-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21285.1.S1_at--892--5473Chr11:11771864..11771888 (25 bp)
GAACTTACAGCGAAGAGGAGCCCAA
LOC_Os11g20384
OsAffx.21285.1.S1_at--408--5955Chr04:18844374..18844398 (25 bp)
GAGCAAACTTGATCGATCCCAGGAA
LOC_Os04g31790
OsAffx.21285.1.S1_at--474--2831Chr01:19590316..19590381 (25 bp)
AAGTATACATCCATCGGCGAACCAC
NONE
OsAffx.21285.1.S1_at--83--1951Chr01:19590100..19590124 (25 bp)
ACGGCCTGGCGCGAATGAAGAAAAA
NONE
OsAffx.21285.1.S1_at--698--9151Chr01:19589661..19589685 (25 bp)
TGCGCCACAGTACGTTGCTTGCTTG
NONE
OsAffx.21285.1.S1_at--120--4931Chr01:19589645..19589669 (25 bp)
GCTTGCTTGTGCTCTTAGAGATCAA
NONE
OsAffx.21285.1.S1_at--764--1251Chr01:19589613..19589637 (25 bp)
AGATTAGGCGCCAGCTCTGCTACTG
NONE
OsAffx.21285.1.S1_at--583--4351Chr01:19589575..19589599 (25 bp)
CCACCTATCACTCCAAATTCAGTAT
NONE
OsAffx.21285.1.S1_at--753--2032Chr02:15946067..15946086 (20 bp)
ACTATAGTTTTGACAGCCACATTGA
NONE
OsAffx.21285.1.S1_at--372--5492Chr06:21706020..21706040 (21 bp)
GAACAGGCTTTCCAACTCGGTAAAT
NONE
OsAffx.21285.1.S1_at--445--9855Chr08:7655835..7655854 (20 bp)
TAAATTATCTGCCACTTTGTCCACA
LOC_Os08g12890
Target Sequence 
GAACTTACAGCGAAGAGGAGCCCAACTCTTCCAAATGTTTTTCCATGGAGCAAACTTGATCGATCCCAGGAAATAAGCTT
CATAGATAGATTTACAAGTATACATCCATCGGCGAACCACCTCTTCTACCAAAACCCAAATGGTCAAGTACTTATAGATG
GCCATATGGCCCGAGGCCCAATGGCCCGGCCCAAGGCACGACAATTTGGCCCGACCCAAGCATGGCACGGCCCGACTAGG
GTCATGCCCGTGCCGGCCCGGCCCGACAGCCGTGCCGTGCCTAGGCTGCTTCCTCGGCACGATGGGCCGGCACGGCCTGG
CGCGAATGAAGAAAAAAACCTGCGCCACAGTACGTTGCTTGCTTGTGCTCTTAGAGATCAAGGCAAAGAGATTAGGCGCC
AGCTCTGCTACTGTTTTCCCTTGCAGCCACCTATCACTCCAAATTCAGTATTTTCTCCATTTCCAACTATAGTTTTGACA
GCCACATTGAAAAGAGAACAGGCTTTCCAACTCGGTAAATTATCTGCCACTTTGTCCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21285.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis