Browse Element(s) Details


OsAffx.21375.1.S1_at

Description gb:NM_192720.1
DB_XREF= gi:34912523
GEN=OSJNBa0090K04.29
TID=OsAffx.21375.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative cyst nematode resistance protein (OSJNBa0090K04.29), mRNA.
PROD=putative cyst nematode resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4233011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42310OsAffx.23633.1.S1_at11/111+24328389..24329818hypothetical protein
LOC_Os01g42310OsAffx.10222.1.S1_x_at1/111+24328389..24329818hypothetical protein
LOC_Os01g42310OsAffx.30217.1.S1_x_at1/111+24328389..24329818hypothetical protein
LOC_Os01g42320OsAffx.23634.2.S1_x_at11/111+24342521..24346789Eukaryotic aspartyl protease family protein
LOC_Os01g42330OsAffx.21375.1.S1_at11/111+24348907..24354383retrotransposon protein, putative, unclassified
LOC_Os01g42330OsAffx.21375.2.S1_x_at7/111+24348907..24354383retrotransposon protein, putative, unclassified
LOC_Os01g42330OsAffx.23250.2.S1_x_at1/111+24348907..24354383retrotransposon protein, putative, unclassified
LOC_Os01g42340OsAffx.2218.2.S1_s_at11/111+24364935..24367043hypothetical protein
LOC_Os01g42350OsAffx.11437.1.S1_at11/111+24374392..24382766PDR5-like ABC transporter, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21375.1.S1_at--690--4191Chr01:24349308..24349332 (25 bp)
CCCTGGGCTCTTCGCAAATGCAAAA
LOC_Os01g42330
OsAffx.21375.1.S1_at--149--2293Chr10:21631970..21631994 (25 bp)
AAATGCAAAACCTTCGCCTGGCTGG
NONE
OsAffx.21375.1.S1_at--669--6491Chr01:24349242..24349266 (25 bp)
GATAGACTATCTACCCGCGGATGGC
LOC_Os01g42330
OsAffx.21375.1.S1_at--822--835Chr10:21632049..21632073 (25 bp)
ATGGATCCATATGTCCCTTATGTCG
NONE
OsAffx.21375.1.S1_at--244--7173Chr10:21632073..21632097 (25 bp)
GTCGGGTCCAGGAGACGGCTCTACA
NONE
OsAffx.21375.1.S1_at--371--3492Chr10:21632106..21632130 (25 bp)
CAGGCTGCCGCTACACAAAGAGAAT
NONE
OsAffx.21375.1.S1_at--803--10092Chr10:21632130..21632154 (25 bp)
TATGGGCGACCCTAGCGGAATGGAC
NONE
OsAffx.21375.1.S1_at--455--1711Chr01:24349085..24349109 (25 bp)
ACCATTGGTGGCAGGTTTCGTCGGT
LOC_Os01g42330
OsAffx.21375.1.S1_at--399--6193Chr10:21632237..21632261 (25 bp)
GAGGCACCCAAAAAGGCTCTACGCT
NONE
OsAffx.21375.1.S1_at--613--9811Chr01:24348998..24349022 (25 bp)
TAACGTTCCTAGTCGTCTGGGAGAT
LOC_Os01g42330
OsAffx.21375.1.S1_at--738--1534Chr11:2047938..2047962 (25 bp)
AGCATAAGGAGCTCCCACCGAGTGG
NONE
Target Sequence 
CCCTGGGCTCTTCGCAAATGCAAAACCTTCGCCTGGCTGGTCATTCAGAATAGAGTCTGGACCTCTGATAGACTATCTAC
CCGCGGATGGCCAAATGGATCCATATGTCCCTTATGTCGTCGGGTCCAGGAGACGGCTCTACACCTCCTCGCAGGCTGCC
GCTACACAAAGAGAATATGGGCGACCCTAGCGGAATGGACGGCGTGCAACAATATCCACCCCAACCATTGGTGGCAGGTT
TCGTCGGTGTTAGAATGGTGGGATCAAACCACAAGTGTAAAAGAGGCACCCAAAAAGGCTCTACGCTCCCTAACGTTCCT
AGTCGTCTGGGAGATCTGGAATGAAAGAAATCGCAGAACATTCCAGCATAAGGAGCTCCCACCGAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis