Browse Element(s) Details


OsAffx.21384.2.S1_x_at

Description tigr:9629.m04029
TID=OsAffx.21384.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Kinesin motor domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4207011/11kinesin motor protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42020OsAffx.380.1.S1_at3/111+24149934..24155232retrotransposon protein, putative, LINE subclass
LOC_Os01g42020OsAffx.21975.1.S1_x_at1/111+24149934..24155232retrotransposon protein, putative, LINE subclass
LOC_Os01g42030Os.41335.2.S1_x_at11/111+24165857..24167611ATPase, AAA family protein, expressed
LOC_Os01g42050OsAffx.23629.1.S1_s_at11/111+24167701..24170395zinc ribbon 1, putative
LOC_Os01g42050OsAffx.23629.2.S1_at8/111+24167701..24170395zinc ribbon 1, putative
LOC_Os01g42040Os.23694.1.S1_at11/111+24170122..24173706Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g42060Os.41333.1.A1_at11/111+24173889..24177174expressed protein
LOC_Os01g42070OsAffx.21384.2.S1_x_at11/111+24177717..24181332kinesin motor protein, putative, expressed
LOC_Os01g42080Os.47749.1.S1_at11/111+24182576..24188461expressed protein
LOC_Os01g42090Os.33697.1.S1_at11/111+24191529..24194053nodulin MtN3 protein, putative, expressed
LOC_Os01g42100OsAffx.21382.1.S1_at11/111+24202161..24203062hypothetical protein
LOC_Os01g42110Os.33697.1.S1_at1/111+24204472..24207094nodulin MtN3 protein, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21384.2.S1_x_at--363--8951Chr01:24178663..24178687 (25 bp)
TGACTGTTCAGGCTCAGACACTTGC
LOC_Os01g42070
OsAffx.21384.2.S1_x_at--586--10171Chr01:24178594..24178618 (25 bp)
TATCAACACCATGCTCAACTCAAAG
LOC_Os01g42070
OsAffx.21384.2.S1_x_at--203--8991Chr01:24178564..24178588 (25 bp)
TGAAGCGTTCTATCCTAGCTGGGAA
LOC_Os01g42070
OsAffx.21384.2.S1_x_at--1044--7611Chr01:24178544..24178568 (25 bp)
GGGAACTGCTTCAACACACCAGATT
LOC_Os01g42070
OsAffx.21384.2.S1_x_at--10--8911Chr01:24178401..24178425 (25 bp)
TGAGTTCATCCGTGATCTGATCAAC
LOC_Os01g42070
OsAffx.21384.2.S1_x_at--337--5371Chr01:24178374..24178398 (25 bp)
GAAGACCTCAAATGTTCCTGAAGCA
LOC_Os01g42070
OsAffx.21384.2.S1_x_at--771--7851Chr01:24178255..24178279 (25 bp)
GGTTTACGTCACCAGTACCAACAGC
LOC_Os01g42070
OsAffx.21384.2.S1_x_at--774--5411Chr01:24178227..24178251 (25 bp)
GAAGCGTACCTTCTGGGACATTGGA
LOC_Os01g42070
OsAffx.21384.2.S1_x_at--1104--2151Chr01:24178198..24178222 (25 bp)
ACAGCCCTTCTACACTTGCAGTGAA
LOC_Os01g42070
OsAffx.21384.2.S1_x_at--57--2931Chr01:24178170..24178194 (25 bp)
AAGGAAGACCCGGAGCCATGTAGCC
LOC_Os01g42070
OsAffx.21384.2.S1_x_at--382--2311Chr01:24178134..24178157 (24 bp)
AAAGGCACTTCAATGCTTCTTCAGC
LOC_Os01g42070
Target Sequence 
TGACTGTTCAGGCTCAGACACTTGCTTCCAATGCCTCGCCGCAGCAATCTCCTGCTCCCTCAGCGCAAATATCAACACCA
TGCTCAACTCAAAGAAAGGTGAAGCGTTCTATCCTAGCTGGGAACTGCTTCAACACACCAGATTCCAAAAGACCTGCAGC
AGAGAATGCACAGGTCCGGGATCTGCAGAGGAAAGTCAAGGCCATGGAGGCCGAGATCGAGAAGATGAAGAAAGAGCACC
TTCTGCAGCTCAAGCAGAAGGATGAGTTCATCCGTGATCTGATCAACAGGAAGACCTCAAATGTTCCTGAAGCAGCAACA
TGTGAGAGAAGAGTTGCCACCAGAGCAAGCGTGCGAAAGGCGCAGAAAGATGCAGCAGCTGCAGGCGAGCTAAGGAGCCC
GAGCCACCGGTTTACGTCACCAGTACCAACAGCCAAGAAGCGTACCTTCTGGGACATTGGAGGCAACAGCCCTTCTACAC
TTGCAGTGAATGGAAGGAAGACCCGGAGCCATGTAGCCGCAGAAACACCAAAAGGCACTTCAATGCTTCTTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21384.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis