Browse Element(s) Details


OsAffx.21410.1.S1_x_at

Description tigr:9629.m03872
TID=OsAffx.21410.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SPFH domain Band 7 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4056011/11SPFH domain/Band 7 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40499Os.41415.2.S1_x_at11/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499Os.41415.1.S1_at11/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.21411.1.S1_at9/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.11410.1.S1_x_at4/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499Os.49232.1.S1_x_at3/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40499OsAffx.18435.1.S1_x_at1/111+23206752..23222789D-mannose binding lectin family protein, expressed
LOC_Os01g40520OsAffx.11409.1.S1_at11/111+23222929..23223669hypothetical protein
LOC_Os01g40530NANA1+23224329..23225691hypothetical protein
LOC_Os01g40540OsAffx.23609.1.S1_at8/111+23226677..23227165lectin receptor-type protein kinase, putative
LOC_Os01g40550Os.20437.1.S1_at7/111+23227915..23229110Hsp20/alpha crystallin family protein, expressed
LOC_Os01g40560OsAffx.21410.1.S1_x_at11/111+23233291..23234659SPFH domain/Band 7 family protein
LOC_Os01g40570Os.8309.1.S1_at10/111+23235138..23237522Outer plastidial membrane protein porin, putative, expressed
LOC_Os01g40580Os.31431.1.S1_at11/111+23241450..23243021hypersensitive-induced response protein, putative, expressed
LOC_Os01g40590Os.5667.1.S1_at11/111+23245301..23250709Protein kinase APK1A, chloroplast precursor, putative, expressed
LOC_Os01g40600OsAffx.11412.1.S1_at11/111+23256091..23256966Cell cycle control protein cwf16, putative, expressed
LOC_Os01g40610Os.24549.1.S1_at11/111+23258775..23264034Cell cycle control protein cwf16, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21410.1.S1_x_at--191--3731Chr01:23234134..23234158 (25 bp)
CTACGAGGTGATGCGCGCGCTCGTC
LOC_Os01g40560
OsAffx.21410.1.S1_x_at--732--4131Chr01:23234151..23234175 (25 bp)
CGCTCGTCGTGGACGTGGAGCCCGA
LOC_Os01g40560
OsAffx.21410.1.S1_x_at--777--9411Chr01:23234322..23234346 (25 bp)
TCGTCGACGGGCTCAGGGCCTGCGT
LOC_Os01g40560
OsAffx.21410.1.S1_x_at--187--9651Chr01:23234334..23234358 (25 bp)
TCAGGGCCTGCGTCGTCGCGTTCTG
LOC_Os01g40560
OsAffx.21410.1.S1_x_at--743--3351Chr01:23234377..23234401 (25 bp)
CACGCCCAGGGAGGTCATGGACATG
LOC_Os01g40560
OsAffx.21410.1.S1_x_at--173--3511Chr01:23234398..23234422 (25 bp)
CATGGTGCTCGTCGCGCAGTACTTG
LOC_Os01g40560
OsAffx.21410.1.S1_x_at--51--4131Chr01:23234412..23234436 (25 bp)
CGCAGTACTTGGACACCGTGAGGGA
LOC_Os01g40560
OsAffx.21410.1.S1_x_at--110--3451Chr01:23234414..23234438 (25 bp)
CAGTACTTGGACACCGTGAGGGAGA
LOC_Os01g40560
OsAffx.21410.1.S1_x_at--38--4131Chr01:23234526..23234550 (25 bp)
CGCAGATACGCGACGGGCTGCTCCA
LOC_Os01g40560
OsAffx.21410.1.S1_x_at--385--9951Chr01:23234532..23234556 (25 bp)
TACGCGACGGGCTGCTCCAGGCCGT
LOC_Os01g40560
OsAffx.21410.1.S1_x_at--1138--4031Chr01:23234596..23234620 (25 bp)
CGTTGGCCTTCCATTGCCATTGCCA
LOC_Os01g40560
Target Sequence 
CTACGAGGTGATGCGCGCGCTCGTCGTGGACGTGGAGCCCGAGGAGGCCGTGAGGCGCGCCATGGGCGAGAGCCGCGCCG
CGGCCGACAGGGCGGTGGCGGAGCGGGCGGCGCGCGCCGGGCGCGCCGAGGCCGACGCCGAGGCCGCGCGCCTCGCCGGC
GTCGGCGCCGCGCGCCACCGCCAGGCCGTCGTCGACGGGCTCAGGGCCTGCGTCGTCGCGTTCTGCGCCGCCGTCCCGGG
CGCCACGCCCAGGGAGGTCATGGACATGGTGCTCGTCGCGCAGTACTTGGACACCGTGAGGGAGATCGCCGCCGCGTCCG
CGTCCGGGTGCTCGGCGGCGGCGGCGGTGCCGTTCCTCCCGCACGGCCCCGCCGCGGCGCGCGACGCCGTGGCGCAGATA
CGCGACGGGCTGCTCCAGGCCGTGCAGCCTCCTGCCGCCGCCGCCGCCGCAAGCGTCGCCGCCGTTGGCCTTCCATTGCC
ATTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21410.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis