Browse Element(s) Details


OsAffx.21449.1.S1_at

Description tigr:9629.m04440
TID=OsAffx.21449.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4639011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46350Os.9524.1.S1_at11/111+26695246..26700949expressed protein
LOC_Os01g46350Os.9524.1.S2_at11/111+26695246..26700949expressed protein
LOC_Os01g46360OsAffx.23686.2.S1_at11/111+26704259..26705009hypothetical protein
LOC_Os01g46360OsAffx.23686.1.S1_s_at11/111+26704259..26705009hypothetical protein
LOC_Os01g46370Os.41516.1.S1_at11/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370Os.51595.1.S1_at10/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370OsAffx.23684.1.S1_x_at2/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370Os.7172.1.S1_at1/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46380Os.4767.2.S1_x_at11/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46380Os.21537.1.S1_x_at3/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46390OsAffx.21449.1.S1_at11/111+26725112..26725522hypothetical protein
LOC_Os01g46400Os.32478.1.S1_at11/111+26728417..26730344expressed protein
LOC_Os01g46410OsAffx.23687.1.S1_at11/111+26741749..26743030expressed protein
LOC_Os01g46420NANA1+26745147..26746163hypothetical protein
LOC_Os01g46430Os.28901.1.S1_at11/111+26747111..26748829glycosyl transferase family 1 protein, putative, expressed
LOC_Os01g46440NANA1+26750358..26750588expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21449.1.S1_at--24--4211Chr01:26725148..26725172 (25 bp)
CCCGACGAGGGCATGAAGATGGCCA
LOC_Os01g46390
OsAffx.21449.1.S1_at--28--8451Chr01:26725168..26725192 (25 bp)
GGCCACGGCGCTGCTAGAGGAGTTC
LOC_Os01g46390
OsAffx.21449.1.S1_at--528--1331Chr01:26725183..26725207 (25 bp)
AGAGGAGTTCGGTCTGCCGCTCGGG
LOC_Os01g46390
OsAffx.21449.1.S1_at--943--4511Chr01:26725213..26725237 (25 bp)
GCCGCTTGCGGAGGTGATCGAGGTC
LOC_Os01g46390
OsAffx.21449.1.S1_at--743--1451Chr01:26725281..26725305 (25 bp)
AGAAGGTGGAGCACCAGTTCAAGAT
LOC_Os01g46390
OsAffx.21449.1.S1_at--420--8911Chr01:26725308..26725332 (25 bp)
TGAGCAAGCAGGTGAGCTACGACGT
LOC_Os01g46390
OsAffx.21449.1.S1_at--609--1571Chr01:26725322..26725346 (25 bp)
AGCTACGACGTGGAGATCACCGGGT
LOC_Os01g46390
OsAffx.21449.1.S1_at--1135--1851Chr01:26725326..26725350 (25 bp)
ACGACGTGGAGATCACCGGGTATGT
LOC_Os01g46390
OsAffx.21449.1.S1_at--780--6031Chr01:26725334..26725358 (25 bp)
GAGATCACCGGGTATGTGAAGGCCA
LOC_Os01g46390
OsAffx.21449.1.S1_at--779--7351Chr01:26725349..26725373 (25 bp)
GTGAAGGCCAAGTGCATCAAGAAGC
LOC_Os01g46390
OsAffx.21449.1.S1_at--522--1611Chr01:26725395..26725419 (25 bp)
AGCTGATGCTGTGGCCGCCGGTGAA
LOC_Os01g46390
Target Sequence 
CCCGACGAGGGCATGAAGATGGCCACGGCGCTGCTAGAGGAGTTCGGTCTGCCGCTCGGGCTGCTGCCGCTTGCGGAGGT
GATCGAGGTCGGGTTCGTGCGCGCCACCGGCTACATGTGGATCGCGCAGCGGAAGAAGGTGGAGCACCAGTTCAAGATGG
TGAGCAAGCAGGTGAGCTACGACGTGGAGATCACCGGGTATGTGAAGGCCAAGTGCATCAAGAAGCTCAAGGGCGTCAAG
GCCAAGGAGCTGATGCTGTGGCCGCCGGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis