Browse Element(s) Details


OsAffx.21460.1.S1_at

Description gb:NM_192341.1
DB_XREF= gi:34911765
GEN=P0038D11.27
TID=OsAffx.21460.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0038D11.27 (P0038D11.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g460109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46000Os.46012.2.S1_x_at9/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46000Os.27088.1.A1_x_at6/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46000Os.46012.3.S1_x_at6/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46010OsAffx.21460.2.S1_s_at11/111+26481478..26482627hypothetical protein
LOC_Os01g46010OsAffx.21460.1.S1_at9/111+26481478..26482627hypothetical protein
LOC_Os01g46020OsAffx.21459.1.S1_at11/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020Os.48001.1.A1_at10/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020OsAffx.21459.2.S1_s_at5/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46030OsAffx.21458.1.S1_at11/111+26496763..26498414Protein kinase domain containing protein
LOC_Os01g46040Os.2030.2.S1_s_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040Os.2030.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040OsAffx.2249.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46050OsAffx.23682.1.S1_at8/111+26506274..26506624hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21460.1.S1_at--598--2611Chr01:26481642..26481689 (25 bp)
AACCACCAAGCCACACGTCAAAGGA
LOC_Os01g46010
OsAffx.21460.1.S1_at--950--8051Chr01:26481704..26481728 (25 bp)
GGAGAGAAGCCACTCTATGCCTTGC
LOC_Os01g46010
OsAffx.21460.1.S1_at--755--10131Chr01:26481719..26481743 (25 bp)
TATGCCTTGCCAACACGACCGATAT
LOC_Os01g46010
OsAffx.21460.1.S1_at--577--1771Chr01:26481736..26481760 (25 bp)
ACCGATATGCTAGTTCGGAGTCGAT
LOC_Os01g46010
OsAffx.21460.1.S1_at--786--8031Chr01:26481752..26481776 (25 bp)
GGAGTCGATAGTGGGCTTCGCCAAC
LOC_Os01g46010
OsAffx.21460.1.S1_at--508--7471Chr01:26481762..26481786 (25 bp)
GTGGGCTTCGCCAACTGCCGTGCAA
LOC_Os01g46010
OsAffx.21460.1.S1_at--32--2091Chr01:26481786..26481810 (25 bp)
ACAAGACCAAACATACCAACTCCTA
LOC_Os01g46010
OsAffx.21460.1.S1_at--247--311Chr01:26481798..26481822 (25 bp)
ATACCAACTCCTATGGGACCCATGT
LOC_Os01g46010
OsAffx.21460.1.S1_at--840--10091Chr01:26481809..26481833 (25 bp)
TATGGGACCCATGTGTAAAGAGTTG
LOC_Os01g46010
OsAffx.21460.1.S1_at--863--7714Chr01:26482446..26482940 (25 bp)
GGGTGTACGCCGATGTCATATGTGA
NONE
OsAffx.21460.1.S1_at--888--52526Chr12:11764378..11764402 (25 bp)
GAATCGATCGGCAGTTATAAATAAG
NONE
Target Sequence 
AACCACCAAGCCACACGTCAAAGGAAGGAGCAAAGGGGTGGAGAGAAGCCACTCTATGCCTTGCCAACACGACCGATATG
CTAGTTCGGAGTCGATAGTGGGCTTCGCCAACTGCCGTGCAACAAGACCAAACATACCAACTCCTATGGGACCCATGTGT
AAAGAGTTGGGGACTATGCTAGAGAAGCACAAGCTTCGACACAAAGCGTCGGTGTCCTCTCTCCCTATGCATCCTCACAA
GAGCTGCGCCATCGCCGCCACCGAATCGTCCAGCGAGGAGGCCGGGGACACCGGATCTGGCGACCCCGGCCTCCCCGCCG
ATGGATCCGGTTGGCTGGTCAGAACCTTCGTTGCTATTTTCTTATCCAATGGGGTCGACAACGTTATTTGGTTTGTGTTC
ATGTTGTTGATCCCGGATCTAGCCAATGTGGCGAAGGAGAAGGAGATCACCAAGTTGGTGGCAATTAAGGGCTCAAGCGC
GACGATGGATGAGGTTGGGTGTACGCCGATGTCATATGTGAATCGATCGGCAGTTATAAATAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis