Browse Element(s) Details


OsAffx.21460.2.S1_s_at

Description tigr:9629.m04402
TID=OsAffx.21460.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4601011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46000Os.46012.2.S1_x_at9/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46000Os.27088.1.A1_x_at6/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46000Os.46012.3.S1_x_at6/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46010OsAffx.21460.2.S1_s_at11/111+26481478..26482627hypothetical protein
LOC_Os01g46010OsAffx.21460.1.S1_at9/111+26481478..26482627hypothetical protein
LOC_Os01g46020OsAffx.21459.1.S1_at11/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020Os.48001.1.A1_at10/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020OsAffx.21459.2.S1_s_at5/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46030OsAffx.21458.1.S1_at11/111+26496763..26498414Protein kinase domain containing protein
LOC_Os01g46040Os.2030.2.S1_s_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040Os.2030.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040OsAffx.2249.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46050OsAffx.23682.1.S1_at8/111+26506274..26506624hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21460.2.S1_s_at--694--5651Chr01:26481560..26481584 (25 bp)
GACATGGTCGTTTGACTTGTTGCCA
LOC_Os01g46010
OsAffx.21460.2.S1_s_at--369--6851Chr01:26481569..26481593 (25 bp)
GTTTGACTTGTTGCCAGTTCCAGCC
LOC_Os01g46010
OsAffx.21460.2.S1_s_at--840--1231Chr01:26481584..26481608 (25 bp)
AGTTCCAGCCCACTGTAGTACAGCC
LOC_Os01g46010
OsAffx.21460.2.S1_s_at--1002--4351Chr01:26481609..26481633 (25 bp)
CCACCTAGCCTCTAATGCTCAAGTA
LOC_Os01g46010
OsAffx.21460.2.S1_s_at--1145--3011Chr01:26481622..26481646 (25 bp)
AATGCTCAAGTAGGCTCGGCAACCA
LOC_Os01g46010
OsAffx.21460.2.S1_s_at--502--4411Chr01:26482206..26482230 (25 bp)
GCCACCGAATCGTCCAGCGAGGAGG
LOC_Os01g46010
OsAffx.21460.2.S1_s_at--817--831Chr01:26482270..26482294 (25 bp)
ATGGATCCGGTTGGCTGGTCAGAAC
LOC_Os01g46010
OsAffx.21460.2.S1_s_at--1136--7811Chr01:26482286..26482310 (25 bp)
GGTCAGAACCTTCGTTGCTATTTTC
LOC_Os01g46010
OsAffx.21460.2.S1_s_at--169--7431Chr01:26482344..26482368 (25 bp)
GTGTTCATGTTGTTGATCCCGGATC
LOC_Os01g46010
OsAffx.21460.2.S1_s_at--971--6371Chr01:26482358..26482382 (25 bp)
GATCCCGGATCTAGCCAATGTGGCG
LOC_Os01g46010
OsAffx.21460.2.S1_s_at--640--10491Chr01:26482414..26482438 (25 bp)
TTAAGGGCTCAAGCGCGACGATGGA
LOC_Os01g46010
Target Sequence 
GACATGGTCGTTTGACTTGTTGCCAGTTCCAGCCCACTGTAGTACAGCCCCACCTAGCCTCTAATGCTCAAGTAGGCTCG
GCAACCACCAAGCTAGAGAAGCACAAGCTTCGACACAAAGCGTCGGTGTCCTCTCTCCCTATGCATCCTCACAAGAGCTG
CGCCATCGCCGCCACCGAATCGTCCAGCGAGGAGGCCGGGGACACCGGATCTGGCGACCCCGGCCTCCCCGCCGATGGAT
CCGGTTGGCTGGTCAGAACCTTCGTTGCTATTTTCTTATCCAATGGGGTCGACAACGTTATTTGGTTTGTGTTCATGTTG
TTGATCCCGGATCTAGCCAATGTGGCGAAGGAGAAGGAGATCACCAAGTTGGTGGCAATTAAGGGCTCAAGCGCGACGAT
GGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21460.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis