Browse Element(s) Details


OsAffx.2249.1.S1_at

Description tigr:9629.m04405
TID=OsAffx.2249.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Bromodomain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4604011/11Bromodomain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46000Os.46012.2.S1_x_at9/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46000Os.27088.1.A1_x_at6/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46000Os.46012.3.S1_x_at6/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46010OsAffx.21460.2.S1_s_at11/111+26481478..26482627hypothetical protein
LOC_Os01g46010OsAffx.21460.1.S1_at9/111+26481478..26482627hypothetical protein
LOC_Os01g46020OsAffx.21459.1.S1_at11/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020Os.48001.1.A1_at10/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020OsAffx.21459.2.S1_s_at5/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46030OsAffx.21458.1.S1_at11/111+26496763..26498414Protein kinase domain containing protein
LOC_Os01g46040Os.2030.2.S1_s_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040Os.2030.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040OsAffx.2249.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46050OsAffx.23682.1.S1_at8/111+26506274..26506624hypothetical protein
LOC_Os01g46060Os.17964.1.S1_at11/111+26510731..26516992expressed protein
LOC_Os01g46060Os.17964.2.S1_x_at10/111+26510731..26516992expressed protein
LOC_Os01g46070Os.12729.1.S1_at11/111+26517600..26521350Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g46080Os.54427.1.A1_at11/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.34087.4.S1_x_at2/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.21387.3.S1_x_at1/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.35566.1.A1_x_at1/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2249.1.S1_at--290--3471Chr01:26503023..26503046 (24 bp)
CAGGGTGCGTTGGTGATCACTGATC
LOC_Os01g46040
OsAffx.2249.1.S1_at--44--8851Chr01:26503010..26503034 (25 bp)
TGATCACTGATCAGGAGCACAATGC
LOC_Os01g46040
OsAffx.2249.1.S1_at--889--6431Chr01:26503009..26503033 (25 bp)
GATCACTGATCAGGAGCACAATGCA
LOC_Os01g46040
OsAffx.2249.1.S1_at--170--391Chr01:26503008..26503032 (25 bp)
ATCACTGATCAGGAGCACAATGCAA
LOC_Os01g46040
OsAffx.2249.1.S1_at--12--9691Chr01:26503007..26503031 (25 bp)
TCACTGATCAGGAGCACAATGCAAA
LOC_Os01g46040
OsAffx.2249.1.S1_at--577--3331Chr01:26503006..26503030 (25 bp)
CACTGATCAGGAGCACAATGCAAAT
LOC_Os01g46040
OsAffx.2249.1.S1_at--184--1951Chr01:26503005..26503029 (25 bp)
ACTGATCAGGAGCACAATGCAAATT
LOC_Os01g46040
OsAffx.2249.1.S1_at--106--3871Chr01:26503004..26503028 (25 bp)
CTGATCAGGAGCACAATGCAAATTT
LOC_Os01g46040
OsAffx.2249.1.S1_at--120--8851Chr01:26503003..26503027 (25 bp)
TGATCAGGAGCACAATGCAAATTTC
LOC_Os01g46040
OsAffx.2249.1.S1_at--966--6431Chr01:26503002..26503026 (25 bp)
GATCAGGAGCACAATGCAAATTTCA
LOC_Os01g46040
OsAffx.2249.1.S1_at--485--391Chr01:26503001..26503025 (25 bp)
ATCAGGAGCACAATGCAAATTTCAG
LOC_Os01g46040
Target Sequence 
CAGGGTGCGTTGGTGATCACTGATCAGGAGCACAATGCAAATTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2249.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis