Browse Element(s) Details


Os.17964.2.S1_x_at

Description gb:NM_192351.1
DB_XREF= gi:34911785
GEN=OJ1316_H05.20
TID=Os.17964.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.17964 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1316_H05.20 (OJ1316_H05.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1316_H05.20 (OJ1316_H05.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4606010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46020OsAffx.21459.1.S1_at11/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020Os.48001.1.A1_at10/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020OsAffx.21459.2.S1_s_at5/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46030OsAffx.21458.1.S1_at11/111+26496763..26498414Protein kinase domain containing protein
LOC_Os01g46040Os.2030.2.S1_s_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040Os.2030.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040OsAffx.2249.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46050OsAffx.23682.1.S1_at8/111+26506274..26506624hypothetical protein
LOC_Os01g46060Os.17964.1.S1_at11/111+26510731..26516992expressed protein
LOC_Os01g46060Os.17964.2.S1_x_at10/111+26510731..26516992expressed protein
LOC_Os01g46070Os.12729.1.S1_at11/111+26517600..26521350Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g46080Os.54427.1.A1_at11/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.34087.4.S1_x_at2/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.21387.3.S1_x_at1/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.35566.1.A1_x_at1/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46090Os.34087.4.S1_x_at2/111+26530063..26533764GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46100OsAffx.10637.1.S1_s_at11/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100OsAffx.10637.3.S1_s_at11/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100OsAffx.10637.4.S1_s_at8/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100OsAffx.10637.2.S1_at1/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110OsAffx.32056.1.S1_x_at11/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110OsAffx.32056.1.S1_at11/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110OsAffx.30536.1.S1_x_at1/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110Os.27834.1.S1_at1/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110Os.27834.1.S1_x_at1/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17964.2.S1_x_at--1093--10632Chr01:26510907..26510931 (25 bp)
TTCGCTGCCGTCTCCGATCGGCGAG
LOC_Os01g46060
Os.17964.2.S1_x_at--450--9451NONE
TCGGCGAGTCCAGGTTTCTGACGGT
NONE
Os.17964.2.S1_x_at--324--4071Chr01:26516481..26516501 (21 bp)
CGAGTCCAGGTTTCTGACGGTGAAA
LOC_Os01g46060
Os.17964.2.S1_x_at--826--1951Chr01:26516501..26516525 (25 bp)
ACTGATGAGGAGGACGCTGTTCCAC
LOC_Os01g46060
Os.17964.2.S1_x_at--504--8111Chr01:26516512..26516536 (25 bp)
GGACGCTGTTCCACCGATAATATAC
LOC_Os01g46060
Os.17964.2.S1_x_at--861--4731Chr01:26516516..26516540 (25 bp)
GCTGTTCCACCGATAATATACGAGG
LOC_Os01g46060
Os.17964.2.S1_x_at--1082--1871Chr01:26516535..26516559 (25 bp)
ACGAGGACAAGGACACAGACGATGA
LOC_Os01g46060
Os.17964.2.S1_x_at--1087--10751Chr01:26516571..26516595 (25 bp)
TTGATGCTATGGAAACTGACGAGGA
LOC_Os01g46060
Os.17964.2.S1_x_at--527--2391Chr01:26516583..26516607 (25 bp)
AAACTGACGAGGAGAGCCAAGAGCT
LOC_Os01g46060
Os.17964.2.S1_x_at--832--4391Chr01:26516598..26516622 (25 bp)
GCCAAGAGCTGGGAGACGTTACTGA
LOC_Os01g46060
Os.17964.2.S1_x_at--756--5991Chr01:26516610..26516634 (25 bp)
GAGACGTTACTGATGCCTCTGAGCA
LOC_Os01g46060
Target Sequence 
TTCGCTGCCGTCTCCGATCGGCGAGTCCAGGTTTCTGACGGTGAAACTGATGAGGAGGACGCTGTTCCACCGATAATATA
CGAGGACAAGGACACAGACGATGAAGAATCTGAAGTTGATGCTATGGAAACTGACGAGGAGAGCCAAGAGCTGGGAGACG
TTACTGATGCCTCTGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17964.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis