Browse Element(s) Details


Os.2030.2.S1_s_at

Description gb:NM_192348.1
DB_XREF= gi:34911779
GEN=OJ1316_H05.17
TID=Os.2030.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2030 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1316_H05.17 (OJ1316_H05.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) OJ1316_H05.17 (OJ1316_H05.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4604011/11Bromodomain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46000Os.46012.2.S1_x_at9/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46000Os.27088.1.A1_x_at6/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46000Os.46012.3.S1_x_at6/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46010OsAffx.21460.2.S1_s_at11/111+26481478..26482627hypothetical protein
LOC_Os01g46010OsAffx.21460.1.S1_at9/111+26481478..26482627hypothetical protein
LOC_Os01g46020OsAffx.21459.1.S1_at11/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020Os.48001.1.A1_at10/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020OsAffx.21459.2.S1_s_at5/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46030OsAffx.21458.1.S1_at11/111+26496763..26498414Protein kinase domain containing protein
LOC_Os01g46040Os.2030.2.S1_s_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040Os.2030.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040OsAffx.2249.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46050OsAffx.23682.1.S1_at8/111+26506274..26506624hypothetical protein
LOC_Os01g46060Os.17964.1.S1_at11/111+26510731..26516992expressed protein
LOC_Os01g46060Os.17964.2.S1_x_at10/111+26510731..26516992expressed protein
LOC_Os01g46070Os.12729.1.S1_at11/111+26517600..26521350Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g46080Os.54427.1.A1_at11/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.34087.4.S1_x_at2/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.21387.3.S1_x_at1/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.35566.1.A1_x_at1/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2030.2.S1_s_at--925--9151Chr01:26503849..26503873 (25 bp)
TGCGCTGCGGCAAGCTCCTGGACAA
LOC_Os01g46040
Os.2030.2.S1_s_at--975--8211Chr01:26503841..26503865 (25 bp)
GGCAAGCTCCTGGACAAGCTCCTGG
LOC_Os01g46040
Os.2030.2.S1_s_at--1143--6171Chr01:26503811..26503835 (25 bp)
GAGGACGGGTGGGTCTTCGCCGAGC
LOC_Os01g46040
Os.2030.2.S1_s_at--437--10511Chr01:26503646..26503670 (25 bp)
TTCAACAACGCCATGTCCTACAACA
LOC_Os01g46040
Os.2030.2.S1_s_at--107--771Chr01:26503634..26503658 (25 bp)
ATGTCCTACAACAGCGCGGGCGACC
LOC_Os01g46040
Os.2030.2.S1_s_at--800--2151Chr01:26503624..26503648 (25 bp)
ACAGCGCGGGCGACCCCGTGTACGA
LOC_Os01g46040
Os.2030.2.S1_s_at--639--4511Chr01:26503592..26503616 (25 bp)
GCCGAGCTCTCCGAAATCTTCGAGG
LOC_Os01g46040
Os.2030.2.S1_s_at--483--9291Chr01:26503583..26503607 (25 bp)
TCCGAAATCTTCGAGGCCGGGTGGC
LOC_Os01g46040
Os.2030.2.S1_s_at--695--2671Chr01:26503514..26503538 (25 bp)
AAGCGGAGGCTCAGTGGTTTGCTCC
LOC_Os01g46040
Os.2030.2.S1_s_at--848--911Chr01:26503508..26503532 (25 bp)
AGGCTCAGTGGTTTGCTCCCGCGGC
LOC_Os01g46040
Os.2030.2.S1_s_at--487--3291Chr01:26503471..26503495 (25 bp)
CACAGGTGACGGTGGCCGAGATCAT
LOC_Os01g46040
Target Sequence 
TGCGCTGCGGCAAGCTCCTGGACAAGCTCCTGGAGCACGAGGACGGGTGGGTCTTCGCCGAGCCGGTGGACGCGCGCGCC
CTCCGCCTCGTCGACTACTACCTGCGCATCTCCGACCCCATGGACCTCGGCACCGTCCGCCGCCGCCTCGAGCGCCGCCG
CTACGCGGACCCGTGGGCGTTCGCCGCCGACGTCCGGCTCACCTTCAACAACGCCATGTCCTACAACAGCGCGGGCGACC
CCGTGTACGAGAGCGCCGCCGAGCTCTCCGAAATCTTCGAGGCCGGGTGGCCCTCCGTTCTCGCGGCGCCACCGCGCCCG
CCCGACGCCGAGCGCAAGCGGAGGCTCAGTGGTTTGCTCCCGCGGCTGCCGGTGGGTGCACAGGTGACGGTGGCCGAGAT
CAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2030.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis