Browse Element(s) Details


Os.48001.1.A1_at

Description gb:CR290307
DB_XREF= gi:44676873
DB_XREF=CR290307
CLONE=y823a07p3
TID=Os.48001.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48001 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1316_H05.13 (OJ1316_H05.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4602010/11TAFII55 protein conserved region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46000Os.46012.2.S1_x_at9/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46000Os.27088.1.A1_x_at6/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46000Os.46012.3.S1_x_at6/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46010OsAffx.21460.2.S1_s_at11/111+26481478..26482627hypothetical protein
LOC_Os01g46010OsAffx.21460.1.S1_at9/111+26481478..26482627hypothetical protein
LOC_Os01g46020OsAffx.21459.1.S1_at11/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020Os.48001.1.A1_at10/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020OsAffx.21459.2.S1_s_at5/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46030OsAffx.21458.1.S1_at11/111+26496763..26498414Protein kinase domain containing protein
LOC_Os01g46040Os.2030.2.S1_s_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040Os.2030.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040OsAffx.2249.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46050OsAffx.23682.1.S1_at8/111+26506274..26506624hypothetical protein
LOC_Os01g46060Os.17964.1.S1_at11/111+26510731..26516992expressed protein
LOC_Os01g46060Os.17964.2.S1_x_at10/111+26510731..26516992expressed protein
LOC_Os01g46070Os.12729.1.S1_at11/111+26517600..26521350Malate dehydrogenase, mitochondrial precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48001.1.A1_at--716--4471Chr01:26492168..26492275 (25 bp)
GCCTGACTTAAATGCAGAACTGGTT
LOC_Os01g46020
Os.48001.1.A1_at--318--10431NONE
TTAGGCATGGAGTATCTGTCAACCA
NONE
Os.48001.1.A1_at--634--3871Chr01:26492319..26492830 (25 bp)
CTGTCAACCAGAATGCTAGCGTAAT
LOC_Os01g46020
Os.48001.1.A1_at--303--7531Chr01:26492845..26492869 (25 bp)
GTGGCAAGAAAGCTGCACCTGCTCC
LOC_Os01g46020
Os.48001.1.A1_at--1101--4771Chr01:26492865..26492889 (25 bp)
GCTCCAGCAACCAAGCGTAATGTTC
LOC_Os01g46020
Os.48001.1.A1_at--405--7071Chr01:26492881..26492905 (25 bp)
GTAATGTTCAACGACCCGCTGCAAA
LOC_Os01g46020
Os.48001.1.A1_at--662--2591Chr01:26492890..26492914 (25 bp)
AACGACCCGCTGCAAACGGTGAAGA
LOC_Os01g46020
Os.48001.1.A1_at--133--6311Chr01:26492940..26492964 (25 bp)
GATGAGTCTGTTGACCCATGAATTC
LOC_Os01g46020
Os.48001.1.A1_at--272--2171Chr01:26493006..26493030 (25 bp)
ACACCCAATTGACTTAGCAGTTCAG
LOC_Os01g46020
Os.48001.1.A1_at--73--5231Chr01:26493049..26493073 (25 bp)
GAATATCCGGACCAACTAGGGCATG
LOC_Os01g46020
Os.48001.1.A1_at--905--2011Chr01:26493063..26493087 (25 bp)
ACTAGGGCATGCTCACTGTTAAGGT
LOC_Os01g46020
Target Sequence 
GCCTGACTTAAATGCAGAACTGGTTCACCGAGTTGAAAAGCATCTCATGAATATTAGGCATGGAGTATCTGTCAACCAGA
ATGCTAGCGTAATTGGAGCGGGAGAAGGTGGCAAGAAAGCTGCACCTGCTCCAGCAACCAAGCGTAATGTTCAACGACCC
GCTGCAAACGGTGAAGAAGCTGAGGCAGAGAGGAGTGACTCTGATGAGTCTGTTGACCCATGAATTCAAGTGGAGTAGAG
TAAATAATCCTGCTCCAATTGCCCGAGCACACCCAATTGACTTAGCAGTTCAGAAGTCTATATCAGAAAATGAATATCCG
GACCAACTAGGGCATGCTCACTGTTAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48001.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis