Browse Element(s) Details


Os.12729.1.S1_at

Description gb:AF444195.1
DB_XREF= gi:19880700
GEN=MDH
TID=Os.12729.1
CNT=50
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12729 (NCBI UniGene Cluster)
DEF=Oryza sativa malate dehydrogenase (MDH) mRNA, complete cds; nuclear gene for mitochondrial product.
PROD=malate dehydrogenase
FL= gb:AK104770.1 gb:AF444195.1 gb:AK071699.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4607011/11Malate dehydrogenase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46020OsAffx.21459.1.S1_at11/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020Os.48001.1.A1_at10/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020OsAffx.21459.2.S1_s_at5/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46030OsAffx.21458.1.S1_at11/111+26496763..26498414Protein kinase domain containing protein
LOC_Os01g46040Os.2030.2.S1_s_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040Os.2030.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040OsAffx.2249.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46050OsAffx.23682.1.S1_at8/111+26506274..26506624hypothetical protein
LOC_Os01g46060Os.17964.1.S1_at11/111+26510731..26516992expressed protein
LOC_Os01g46060Os.17964.2.S1_x_at10/111+26510731..26516992expressed protein
LOC_Os01g46070Os.12729.1.S1_at11/111+26517600..26521350Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g46080Os.54427.1.A1_at11/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.34087.4.S1_x_at2/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.21387.3.S1_x_at1/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.35566.1.A1_x_at1/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46090Os.34087.4.S1_x_at2/111+26530063..26533764GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46100OsAffx.10637.1.S1_s_at11/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100OsAffx.10637.3.S1_s_at11/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100OsAffx.10637.4.S1_s_at8/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100OsAffx.10637.2.S1_at1/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110OsAffx.32056.1.S1_x_at11/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110OsAffx.32056.1.S1_at11/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110OsAffx.30536.1.S1_x_at1/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110Os.27834.1.S1_at1/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110Os.27834.1.S1_x_at1/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0042579cellular_componentmicrobody
GO:0016615molecular_functionmalate dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12729.1.S1_at--1106--2751Chr01:26519677..26519701 (25 bp)
AAGACATCAAGGCTCTTACCAAGAG
LOC_Os01g46070
Os.12729.1.S1_at--955--8511Chr01:26519741..26519765 (25 bp)
TGGAAAGGGCTCTGCAACCTTGTCC
LOC_Os01g46070
Os.12729.1.S1_at--558--3251Chr01:26519755..26519883 (25 bp)
CAACCTTGTCCATGGCGTATGCTGG
LOC_Os01g46070
Os.12729.1.S1_at--476--4031Chr01:26519875..26519898 (24 bp)
CGTATGCTGGTGCTGTTTTCGCAAA
LOC_Os01g46070
Os.12729.1.S1_at--241--5131Chr01:26519894..26519918 (25 bp)
GCAAATGCTTGCTTAAAGGGTCTGA
LOC_Os01g46070
Os.12729.1.S1_at--836--1131Chr01:26519923..26519947 (25 bp)
AGTGCCGGACGTTGTTGAATGCTCT
LOC_Os01g46070
Os.12729.1.S1_at--163--2831Chr01:26520928..26520952 (25 bp)
AAGTTCTTGGGTTGGGCCAGCTGTC
LOC_Os01g46070
Os.12729.1.S1_at--104--10851Chr01:26520939..26520963 (25 bp)
TTGGGCCAGCTGTCAGACTTTGAGA
LOC_Os01g46070
Os.12729.1.S1_at--156--1091Chr01:26520985..26521009 (25 bp)
AGGGCGAGCTCAAGGCTTCAATTGA
LOC_Os01g46070
Os.12729.1.S1_at--434--6211Chr01:26521077..26521101 (25 bp)
GAGGCTTCTCTTGATTTGATTTATG
LOC_Os01g46070
Os.12729.1.S1_at--269--9931Chr01:26521110..26521134 (25 bp)
TACCCCTTGTGTTGGGATACCGAGG
LOC_Os01g46070
Target Sequence 
AAGACATCAAGGCTCTTACCAAGAGAACACAGGATGGTGGGACTGAAGTTGTTGAAGCAAAGGCTGGAAAGGGCTCTGCA
ACCTTGTCCATGGCGTATGCTGGTGCTGTTTTCGCAAATGCTTGCTTAAAGGGTCTGAATGGAGTGCCGGACGTTGTTGA
ATGCTCTTTTGTGCAATCAACTGTAACAGAGCTGCCATTCTTTGCCTCCAAGGTGAAGCTTGGGAAGAATGGAGTTGAGG
AAGTTCTTGGGTTGGGCCAGCTGTCAGACTTTGAGAAGGAAGGACTGGAGAATCTTAAGGGCGAGCTCAAGGCTTCAATT
GAGAAGGGTATCAAATTTGCAAATGCGTAGTTAGGCCATTTTGCAGACTAGCAACTCATACCTGTAGATGAGGCTTCTCT
TGATTTGATTTATGCTTTTTTCTACCCCTTGTGTTGGGATACCGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12729.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis