Browse Element(s) Details


Os.54427.1.A1_at

Description gb:AK105142.1
DB_XREF= gi:32990351
TID=Os.54427.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54427 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-A07, full insert sequence.
FL= gb:AK105142.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4608011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46040Os.2030.2.S1_s_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040Os.2030.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040OsAffx.2249.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46050OsAffx.23682.1.S1_at8/111+26506274..26506624hypothetical protein
LOC_Os01g46060Os.17964.1.S1_at11/111+26510731..26516992expressed protein
LOC_Os01g46060Os.17964.2.S1_x_at10/111+26510731..26516992expressed protein
LOC_Os01g46070Os.12729.1.S1_at11/111+26517600..26521350Malate dehydrogenase, mitochondrial precursor, putative, expressed
LOC_Os01g46080Os.54427.1.A1_at11/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.34087.4.S1_x_at2/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.21387.3.S1_x_at1/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46080Os.35566.1.A1_x_at1/111+26524908..26528558GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46090Os.34087.4.S1_x_at2/111+26530063..26533764GDSL-like Lipase/Acylhydrolase family protein
LOC_Os01g46100OsAffx.10637.1.S1_s_at11/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100OsAffx.10637.3.S1_s_at11/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100OsAffx.10637.4.S1_s_at8/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46100OsAffx.10637.2.S1_at1/111+26534821..26538507transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110OsAffx.32056.1.S1_x_at11/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110OsAffx.32056.1.S1_at11/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110OsAffx.30536.1.S1_x_at1/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110Os.27834.1.S1_at1/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46110Os.27834.1.S1_x_at1/111+26540060..26545092transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46120Os.14232.1.S1_at11/111+26549465..26551967GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46120Os.34087.1.S1_x_at3/111+26549465..26551967GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g46120Os.21387.3.S1_x_at1/111+26549465..26551967GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54427.1.A1_at--14--8131Chr01:26527990..26528014 (25 bp)
GGACTGCTACGAGGTTCATATACAC
LOC_Os01g46080
Os.54427.1.A1_at--1111--331Chr01:26528009..26528033 (25 bp)
ATACACAACCTTCATTTGCTACCAC
LOC_Os01g46080
Os.54427.1.A1_at--460--211Chr01:26528022..26528046 (25 bp)
ATTTGCTACCACCACTAATTCGTGC
LOC_Os01g46080
Os.54427.1.A1_at--1122--3131Chr01:26528038..26528062 (25 bp)
AATTCGTGCCCGCAAATTACTGAGC
LOC_Os01g46080
Os.54427.1.A1_at--175--6611Chr01:26528161..26528185 (25 bp)
GATTGTGGTATTTTTGCCTCATTAC
LOC_Os01g46080
Os.54427.1.A1_at--331--871Chr01:26528212..26528236 (25 bp)
ATGGCTGTTGCCCAAGTGATTGGCT
LOC_Os01g46080
Os.54427.1.A1_at--994--11Chr01:26528230..26528254 (25 bp)
ATTGGCTGGCTCTTGTTATTCCTTC
LOC_Os01g46080
Os.54427.1.A1_at--671--3651Chr01:26528251..26528275 (25 bp)
CTTCTCTGTTTTTAGTCACGACCAC
LOC_Os01g46080
Os.54427.1.A1_at--721--2531Chr01:26528418..26528442 (25 bp)
AACTACATTCTTTGGTCACCTTGGC
LOC_Os01g46080
Os.54427.1.A1_at--344--7391Chr01:26528461..26528485 (25 bp)
GTGATGTCGCTTCTCGTAGAGGCAT
LOC_Os01g46080
Os.54427.1.A1_at--9--3531Chr01:26528513..26528537 (25 bp)
CATGCAATCCGATCGCTTTATCTAA
LOC_Os01g46080
Target Sequence 
GGACTGCTACGAGGTTCATATACACAACCTTCATTTGCTACCACCACTAATTCGTGCCCGCAAATTACTGAGCTCAGTTC
TTCTGTTGAATACAAGGTCCTCTACGATTTGTAATTCTGTAACTATATTTTTTTTATTATATAGACAATACGTGTGATTA
AAAGATGTAACGATTGTGGTATTTTTGCCTCATTACAGAACTGCAGAACTGTTCTACACAGAATGGCTGTTGCCCAAGTG
ATTGGCTGGCTCTTGTTATTCCTTCTCTGTTTTTAGTCACGACCACAAGGTTTTATTTGTGGATCGTTTGATTCTTCGTA
AATTTTTAAGATTTATTATTTCTTATAGGGTATGTGTAGTATTATTATAATTTAGCTCCATTGTTTTTCTTCTGTGTATA
GTGAAAGGGTTAGGGGTTACAGGGAGACAACTACATTCTTTGGTCACCTTGGCTGCGTGGCTGATGTGGCCGTGATGTCG
CTTCTCGTAGAGGCATTTCTTATGAGCGATATTGTATAAAGATCATGCAATCCGATCGCTTTATCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54427.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis