Browse Element(s) Details


OsAffx.21458.1.S1_at

Description tigr:9629.m04404
TID=OsAffx.21458.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4603011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46000Os.46012.2.S1_x_at9/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46000Os.27088.1.A1_x_at6/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46000Os.46012.3.S1_x_at6/111+26470581..26476285retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g46010OsAffx.21460.2.S1_s_at11/111+26481478..26482627hypothetical protein
LOC_Os01g46010OsAffx.21460.1.S1_at9/111+26481478..26482627hypothetical protein
LOC_Os01g46020OsAffx.21459.1.S1_at11/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020Os.48001.1.A1_at10/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46020OsAffx.21459.2.S1_s_at5/111+26490645..26493157TAFII55 protein conserved region containing protein, expressed
LOC_Os01g46030OsAffx.21458.1.S1_at11/111+26496763..26498414Protein kinase domain containing protein
LOC_Os01g46040Os.2030.2.S1_s_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040Os.2030.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46040OsAffx.2249.1.S1_at11/111+26500038..26504078Bromodomain containing protein, expressed
LOC_Os01g46050OsAffx.23682.1.S1_at8/111+26506274..26506624hypothetical protein
LOC_Os01g46060Os.17964.1.S1_at11/111+26510731..26516992expressed protein
LOC_Os01g46060Os.17964.2.S1_x_at10/111+26510731..26516992expressed protein
LOC_Os01g46070Os.12729.1.S1_at11/111+26517600..26521350Malate dehydrogenase, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21458.1.S1_at--638--1291Chr01:26497816..26497840 (25 bp)
AGATCCTTCACCTGGACATCAAGCC
LOC_Os01g46030
OsAffx.21458.1.S1_at--907--371Chr01:26497833..26497857 (25 bp)
ATCAAGCCGGCGAACATACTCCTCG
LOC_Os01g46030
OsAffx.21458.1.S1_at--839--751Chr01:26497899..26497923 (25 bp)
ATGTCCATCGGGAGGGACCTGACCA
LOC_Os01g46030
OsAffx.21458.1.S1_at--820--1071Chr01:26497911..26497935 (25 bp)
AGGGACCTGACCAGCGTCGACACGC
LOC_Os01g46030
OsAffx.21458.1.S1_at--1044--6331Chr01:26497970..26497994 (25 bp)
GATGCTGGTCAACGCGCTGTCCGCC
LOC_Os01g46030
OsAffx.21458.1.S1_at--669--4211Chr01:26498096..26498120 (25 bp)
GCCGCCGGATTTCACCAAGGAATTC
LOC_Os01g46030
OsAffx.21458.1.S1_at--552--3211Chr01:26498111..26498135 (25 bp)
CAAGGAATTCCTCCCGTGCGTCATG
LOC_Os01g46030
OsAffx.21458.1.S1_at--190--7331Chr01:26498261..26498285 (25 bp)
GTGCACGCAGCATAGCCGGGACATG
LOC_Os01g46030
OsAffx.21458.1.S1_at--1064--671Chr01:26498295..26498319 (25 bp)
ATGACGGACGTCGTGGACATGCTCG
LOC_Os01g46030
OsAffx.21458.1.S1_at--528--8531Chr01:26498308..26498332 (25 bp)
TGGACATGCTCGAAGGGCGCGCCCC
LOC_Os01g46030
OsAffx.21458.1.S1_at--424--9271Chr01:26498354..26498378 (25 bp)
TCCTGAATTTCTCGGAGACACCTTC
LOC_Os01g46030
Target Sequence 
AGATCCTTCACCTGGACATCAAGCCGGCGAACATACTCCTCGACGGCGACTTCCGGGCGCACGTCTCCGACTTCGGCATC
TCCATGTCCATCGGGAGGGACCTGACCAGCGTCGACACGCGCTGGAGGGGCACCCTCGGTTACATGGCGCCGGAGATGCT
GGTCAACGCGCTGTCCGCCAAGTCCGACGTGTACAGCTACGGCATGATGCTGTTCGAGCTCGTCGGCGGACGCCGGAACT
TCGAGCTCGCGGGCAGCGGGGGCGCCTCGCAGGCGCGGGCGCCGCCGGATTTCACCAAGGAATTCCTCCCGTGCGTCATG
CGGGACAGGATGGAGGAAGGCCGGCTCATGGAGGTGGTGGACGCCACCATGGCGCGCGGCGACGGCGGCGGCGCGGCTGG
CGTCGACGAGGAGGAGGTGGAGGTCGTCGTGAAGGTGGCGTTGTGGTGCACGCAGCATAGCCGGGACATGAGGCCCGGCA
TGACGGACGTCGTGGACATGCTCGAAGGGCGCGCCCCCATCCCGCCGCCGCCTGTTCGTCCTGAATTTCTCGGAGACACC
TTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21458.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis