Browse Element(s) Details


OsAffx.21521.1.S1_at

Description gb:NM_191867.1
DB_XREF= gi:34910817
GEN=P0456A01.14
TID=OsAffx.21521.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0456A01.14 (P0456A01.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5282010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52770Os.28229.2.S1_x_at11/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52770Os.28229.1.S1_at5/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52770Os.51561.1.S1_x_at1/111+30688608..30690943GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g52780Os.41805.1.S1_at11/111+30689910..30697060TB2/DP1, HVA22 family protein, expressed
LOC_Os01g52780Os.37148.1.S1_at11/111+30689910..30697060TB2/DP1, HVA22 family protein, expressed
LOC_Os01g52790Os.10346.1.S1_at11/111+30699052..30703760Cytochrome P450 family protein, expressed
LOC_Os01g52800NANA1+30705033..30705832Cytochrome P450 72A1, putative
LOC_Os01g52810Os.38212.1.S1_at6/111+30707676..30710005expressed protein
LOC_Os01g52810Os.52501.1.S1_x_at5/111+30707676..30710005expressed protein
LOC_Os01g52820OsAffx.21521.1.S1_at10/111+30712833..30713207hypothetical protein
LOC_Os01g52830Os.941.1.S1_at11/111+30713755..30714721secreted protein, putative, expressed
LOC_Os01g52840Os.34131.1.S1_s_at10/111+30716516..30718652hAT family dimerisation domain containing protein
LOC_Os01g52850NANA1+30719608..30720030hypothetical protein
LOC_Os01g52864Os.942.1.S1_at11/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864OsAffx.2320.1.S1_at7/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52864Os.53962.1.S1_at1/111+30725792..30732331integral membrane family protein, putative, expressed
LOC_Os01g52880OsAffx.2321.2.S1_s_at11/111+30733907..30735353Leucine Rich Repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21521.1.S1_at--321--3451Chr01:30712770..30712794 (25 bp)
CAGTGGCGGATCGAGCGGTAGCGGT
NONE
OsAffx.21521.1.S1_at--716--4591Chr01:30712846..30712870 (25 bp)
GCGACGGCTGGGACCGATGCACTAT
LOC_Os01g52820
OsAffx.21521.1.S1_at--903--3891Chr01:30712853..30712877 (25 bp)
CTGGGACCGATGCACTATATCCTGT
LOC_Os01g52820
OsAffx.21521.1.S1_at--887--4691Chr01:30712942..30712966 (25 bp)
GCGGCGACGATCTCAACCTCGACTG
LOC_Os01g52820
OsAffx.21521.1.S1_at--1027--9372Chr08:15257885..15257934 (25 bp)
TCGAGTTGGGCGACACAGCTACCCA
NONE
OsAffx.21521.1.S1_at--923--3431Chr01:30713036..30713060 (25 bp)
CAGATGCCAGAGCAGTGCCTCTGAT
LOC_Os01g52820
OsAffx.21521.1.S1_at--93--9191Chr01:30713051..30713075 (25 bp)
TGCCTCTGATAAGGGTGCGCGGACC
LOC_Os01g52820
OsAffx.21521.1.S1_at--232--7291Chr01:30713065..30713089 (25 bp)
GTGCGCGGACCTCCTATAGCATTCG
LOC_Os01g52820
OsAffx.21521.1.S1_at--465--10011Chr01:30713081..30713105 (25 bp)
TAGCATTCGCACACCCCTGCAGGGA
LOC_Os01g52820
OsAffx.21521.1.S1_at--535--1053Chr08:13857212..13857571 (25 bp)
AGGTGTGAGACCACGCTCCAAGGTG
NONE
OsAffx.21521.1.S1_at--574--5851Chr01:30713153..30713177 (25 bp)
GACCACGCTCCAAGGTGGAGCATTA
LOC_Os01g52820
Target Sequence 
CAGTGGCGGATCGAGCGGTAGCGGTGACGGATCGAGGCGGCGGCCGGGATCGAAGCAGCGGCCATGGATCGACGCGGCGA
CGGCTGGGACCGATGCACTATATCCTGTCATTCTCCGATGCGCCGATCTTCTTCTCCCCACCGACTGGCCTCGAGCTCGT
CGGATCTGCACGGCGGCGACGATCTCAACCTCGACTGTGATGGCAATGGCGTGGGAGCTCGAGTTGGGCGACACAGCTAC
CCAACGCGCATCCTCATCGATTCCTCCAGATGCCAGAGCAGTGCCTCTGATAAGGGTGCGCGGACCTCCTATAGCATTCG
CACACCCCTGCAGGGACGCGGCTCCTTCCGACGTGGCGCGAATATTCGCTTTGGGAGGTGTGAGACCACGCTCCAAGGTG
GAGCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis