Browse Element(s) Details


OsAffx.21565.1.S1_at

Description gb:NM_191613.1
DB_XREF= gi:34910309
GEN=P0013F10.14
TID=OsAffx.21565.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0013F10.14 (P0013F10.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0817011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g08140Os.26710.1.S1_at3/111+3934551..3935714non-phototropic hypocotyl protein, putative
LOC_Os01g08150OsAffx.4509.1.S1_s_at11/111+3935935..3939207expressed protein
LOC_Os01g08150Os.554.1.S1_at11/111+3935935..3939207expressed protein
LOC_Os01g08150OsAffx.4509.1.S1_x_at2/111+3935935..3939207expressed protein
LOC_Os01g08160Os.29819.2.S1_x_at11/111+3949841..3951733myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os01g08170OsAffx.21565.1.S1_at11/111+3955424..3958705hypothetical protein
LOC_Os01g08170OsAffx.26278.1.S1_x_at2/111+3955424..3958705hypothetical protein
LOC_Os01g08180OsAffx.23159.1.S1_at7/111+3959267..3960370hypothetical protein
LOC_Os01g08190Os.23654.2.S1_x_at11/111+3972721..3981713Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os01g08190Os.23654.1.S1_at11/111+3972721..3981713Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os01g08190Os.10429.1.S1_at1/111+3972721..3981713Transcriptional corepressor LEUNIG, putative, expressed
LOC_Os01g08200Os.7173.1.S1_s_at11/111+3983449..3992200Ubiquitin carboxyl-terminal hydrolase 14, putative, expressed
LOC_Os01g08200Os.7173.1.S1_at11/111+3983449..3992200Ubiquitin carboxyl-terminal hydrolase 14, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21565.1.S1_at--630--8531Chr01:3958233..3958257 (25 bp)
TGGAGGAGTACATCGGGCTCGCCCA
LOC_Os01g08170
OsAffx.21565.1.S1_at--921--4791Chr01:3958249..3958273 (25 bp)
GCTCGCCCAGGACATGTTCCTGCTG
LOC_Os01g08170
OsAffx.21565.1.S1_at--952--7951Chr01:3958302..3958326 (25 bp)
GGATCAACTGCCGGCCGCTGAAGAC
LOC_Os01g08170
OsAffx.21565.1.S1_at--330--911Chr01:3958355..3958379 (25 bp)
AGGCTGCTGCCGCACGTGTACGACT
LOC_Os01g08170
OsAffx.21565.1.S1_at--502--1911Chr01:3958368..3958392 (25 bp)
ACGTGTACGACTACGTGAGGGCGCC
LOC_Os01g08170
OsAffx.21565.1.S1_at--555--9711Chr01:3958398..3958422 (25 bp)
TCAACCCCTACTTCGCGGAGGAGTA
LOC_Os01g08170
OsAffx.21565.1.S1_at--965--1171Chr01:3958419..3958443 (25 bp)
AGTACGAGTTCGTGAACACCAGCCT
LOC_Os01g08170
OsAffx.21565.1.S1_at--318--7351Chr01:3958430..3958454 (25 bp)
GTGAACACCAGCCTCGACTTCTACT
LOC_Os01g08170
OsAffx.21565.1.S1_at--1062--5671Chr01:3958445..3958469 (25 bp)
GACTTCTACTCCAGGTCCGGCGACG
LOC_Os01g08170
OsAffx.21565.1.S1_at--1126--2731Chr01:3958568..3958592 (25 bp)
AAGAAGCTGCAGCACCTCGGGTCGC
LOC_Os01g08170
OsAffx.21565.1.S1_at--937--7711Chr01:3958593..3958617 (25 bp)
GGGTGTACGAGCGACTGCCGTCCAT
LOC_Os01g08170
Target Sequence 
TGGAGGAGTACATCGGGCTCGCCCAGGACATGTTCCTGCTGCCGCAGGTGATCGGGAACGTGGTGTGGCGGATCAACTGC
CGGCCGCTGAAGACGGGGTACTACGCCGGCTTGACGGCGGTGAGGCTGCTGCCGCACGTGTACGACTACGTGAGGGCGCC
GGCGATCAACCCCTACTTCGCGGAGGAGTACGAGTTCGTGAACACCAGCCTCGACTTCTACTCCAGGTCCGGCGACGTCG
CCATCCCGCTCGCCGCCGTCGCGCTCGCCGCGGCGGTGTACGTGCAGCAGCGGTGGAACTACAAGATCATCAGCAAGACG
GTGAAGACGCAGCAGAAGAAGCTGCAGCACCTCGGGTCGCGGGTGTACGAGCGACTGCCGTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21565.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis