Browse Element(s) Details


OsAffx.21616.1.S1_s_at

Description tigr:9629.m05354
TID=OsAffx.21616.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5489011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54850Os.42099.1.S1_at10/111+31877510..31879858F-box domain containing protein, expressed
LOC_Os01g54860Os.6033.1.S1_at11/111+31879749..318836853-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os01g54870Os.11498.1.S1_at11/111+31886080..3188768460S ribosomal protein L18a, putative, expressed
LOC_Os01g54870Os.9361.1.S1_s_at1/111+31886080..3188768460S ribosomal protein L18a, putative, expressed
LOC_Os01g54880Os.10227.1.S1_at11/111+31888240..31891006prkcsh-prov protein, putative, expressed
LOC_Os01g54890OsAffx.21616.1.S1_s_at11/111+31894650..31895589AP2 domain containing protein, expressed
LOC_Os01g54900Os.53935.1.S1_at11/111+31895859..31902459lipid-A-disaccharide synthase family protein, expressed
LOC_Os01g54910Os.7311.1.S1_at11/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54910Os.42095.1.S1_x_at10/111+31902569..31910369GTP-binding protein TypA containing protein, expressed
LOC_Os01g54920Os.5664.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.1.S1_s_at11/111+31911961..31915903expressed protein
LOC_Os01g54920Os.11171.2.S1_x_at8/111+31911961..31915903expressed protein
LOC_Os01g54930Os.18072.1.S1_x_at11/111+31919430..31923703expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009864biological_processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21616.1.S1_s_at--178--6951Chr01:31895518..31895542 (25 bp)
GTAGTTTGTTACTCTGTGCTTAGTG
LOC_Os01g54890
OsAffx.21616.1.S1_s_at--210--10051Chr01:31895519..31895543 (25 bp)
TAGTTTGTTACTCTGTGCTTAGTGC
LOC_Os01g54890
OsAffx.21616.1.S1_s_at--44--6871Chr01:31895521..31895545 (25 bp)
GTTTGTTACTCTGTGCTTAGTGCTC
LOC_Os01g54890
OsAffx.21616.1.S1_s_at--891--10251Chr01:31895522..31895546 (25 bp)
TTTGTTACTCTGTGCTTAGTGCTCA
LOC_Os01g54890
OsAffx.21616.1.S1_s_at--593--10791Chr01:31895523..31895547 (25 bp)
TTGTTACTCTGTGCTTAGTGCTCAC
LOC_Os01g54890
OsAffx.21616.1.S1_s_at--745--6771Chr01:31895525..31895549 (25 bp)
GTTACTCTGTGCTTAGTGCTCACAT
LOC_Os01g54890
OsAffx.21616.1.S1_s_at--289--9911Chr01:31895527..31895551 (25 bp)
TACTCTGTGCTTAGTGCTCACATTT
LOC_Os01g54890
OsAffx.21616.1.S1_s_at--1038--3771Chr01:31895529..31895553 (25 bp)
CTCTGTGCTTAGTGCTCACATTTTT
LOC_Os01g54890
OsAffx.21616.1.S1_s_at--174--3891Chr01:31895531..31895555 (25 bp)
CTGTGCTTAGTGCTCACATTTTTTA
LOC_Os01g54890
OsAffx.21616.1.S1_s_at--894--7311Chr01:31895533..31895557 (25 bp)
GTGCTTAGTGCTCACATTTTTTATG
LOC_Os01g54890
OsAffx.21616.1.S1_s_at--935--4891Chr01:31895535..31895559 (25 bp)
GCTTAGTGCTCACATTTTTTATGAT
LOC_Os01g54890
Target Sequence 
GTAGTTTGTTACTCTGTGCTTAGTGCTCACATTTTTTATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21616.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis