Browse Element(s) Details


OsAffx.21629.2.S1_x_at

Description tigr:9633.m02460
TID=OsAffx.21629.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2712011/11hypothetical protein
LOC_Os08g096603/11hypothetical protein
LOC_Os01g541802/11hypothetical protein
LOC_Os06g460301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g27090Os.11231.1.S1_at11/115+15674973..15676697expressed protein
LOC_Os05g27100Os.8457.1.S1_at11/115+15692557..15695566heavy metal-associated domain containing protein, expressed
LOC_Os05g27110Os.5530.2.S1_s_at11/115+15699189..15700298hypothetical protein
LOC_Os05g27110Os.5530.2.S1_a_at8/115+15699189..15700298hypothetical protein
LOC_Os05g27110Os.5530.2.S1_x_at7/115+15699189..15700298hypothetical protein
LOC_Os05g27110Os.42141.1.S1_x_at6/115+15699189..15700298hypothetical protein
LOC_Os05g27110OsAffx.5404.1.S1_at6/115+15699189..15700298hypothetical protein
LOC_Os05g27110Os.5530.3.S1_x_at6/115+15699189..15700298hypothetical protein
LOC_Os05g27110Os.34819.3.S1_x_at1/115+15699189..15700298hypothetical protein
LOC_Os05g27120OsAffx.21629.2.S1_x_at11/115+15701305..15701847hypothetical protein
LOC_Os05g27120OsAffx.16924.1.S1_x_at4/115+15701305..15701847hypothetical protein
LOC_Os05g27130Os.47463.1.S1_x_at3/115+15711182..15712171transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27130Os.14491.2.S1_x_at3/115+15711182..15712171transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27140Os.14491.2.S1_x_at4/115+15714170..15718937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27140Os.47463.1.S1_x_at3/115+15714170..15718937transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27150NANA5+15720344..15722614transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g27160OsAffx.27035.1.S1_at10/115+15724296..15724730hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21629.2.S1_x_at--130--95312Chr08:5574279..5574303 (25 bp)
TCTCTTTTCTCTCTCAGATGGCGAG
LOC_Os08g09660
OsAffx.21629.2.S1_x_at--1096--9557Chr08:5574281..5574305 (25 bp)
TCTTTTCTCTCTCAGATGGCGAGGA
LOC_Os08g09660
OsAffx.21629.2.S1_x_at--59--10396Chr08:5574283..5574306 (24 bp)
TTTTCTCTCTCAGATGGCGAGGACG
LOC_Os08g09660
OsAffx.21629.2.S1_x_at--857--10316Chr07:6042936..6042997 (25 bp)
TTTCTCTCTCAGATGGCGAGGACGG
NONE
OsAffx.21629.2.S1_x_at--636--8531Chr05:15701710..15701734 (25 bp)
TGGACGAGCGTGTGGCCACCGGAGC
LOC_Os05g27120
OsAffx.21629.2.S1_x_at--718--9031Chr05:15701607..15701631 (25 bp)
TGCACCGCCTTCGACGAGCATGGAG
LOC_Os05g27120
OsAffx.21629.2.S1_x_at--278--4451Chr05:15701601..15701625 (25 bp)
GCCTTCGACGAGCATGGAGGCCACC
LOC_Os05g27120
OsAffx.21629.2.S1_x_at--936--9533Chr06:27904364..27904397 (25 bp)
TCTACGTCCGCGACAGCCAGGCCAA
LOC_Os06g46030
OsAffx.21629.2.S1_x_at--955--2731Chr05:15701493..15701517 (25 bp)
AAGAAGCGTCGGAAGCGCCCTCCCA
LOC_Os05g27120
OsAffx.21629.2.S1_x_at--727--9371Chr05:15701466..15701490 (25 bp)
TCGTTTTCTCACTCTCAGGCCGCCG
LOC_Os05g27120
OsAffx.21629.2.S1_x_at--253--6451Chr05:15701393..15701417 (25 bp)
GATCAGCCGACATGGGAGCTTGCGT
LOC_Os05g27120
Target Sequence 
TCTCTTTTCTCTCTCAGATGGCGAGGACGGCGGCCGGCAGAGTTGAGCGGGGCGGTGGCCGCGGTGGACGAGCGTGTGGC
CACCGGAGCCACCCCTCGCCGCCAACGCTGTGCCCGTGCCCGCTCCGCCAGGCGTGGGGCAGCCTCGACACGCTCGTCGG
CCGCCTCTGCACCGCCTTCGACGAGCATGGAGGCCACCCCGAGGCCAACCCGTTCGGTGCCCGCGTTGTCCGCCTCTACG
TCCGCGACAGCCAGGCCAAGGTGCGCGGCATCGCCTACGAGAAGAAGCGTCGGAAGCGCCCTCCCACCTCGTTTTCTCAC
TCTCAGGCCGCCGCCGCCGCCACTTGCCCGGCGAGCCCAGCCGCTAGCCCGACGCCGGAGAGATCAGCCGACATGGGAGC
TTGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21629.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis