Browse Element(s) Details


OsAffx.21631.1.S1_at

Description tigr:9629.m05281
TID=OsAffx.21631.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5417011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54119Os.35400.1.S1_at11/111+31447556..31459579retrotransposon protein, putative, unclassified, expressed
LOC_Os01g54140OsAffx.21632.1.S1_at11/111+31461100..31463986hypothetical protein
LOC_Os01g54150OsAffx.22461.2.S1_x_at11/111+31466273..31469303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54150OsAffx.22461.3.S1_x_at3/111+31466273..31469303retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54160NANA1+31471880..31477780retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54170OsAffx.21631.1.S1_at11/111+31484241..31485073expressed protein
LOC_Os01g54180OsAffx.21629.1.S1_x_at9/111+31489987..31492000hypothetical protein
LOC_Os01g54180OsAffx.16924.1.S1_x_at8/111+31489987..31492000hypothetical protein
LOC_Os01g54180OsAffx.21629.2.S1_x_at2/111+31489987..31492000hypothetical protein
LOC_Os01g54190Os.34819.2.S1_s_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_a_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.42141.1.S1_x_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_s_at11/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.2.S1_x_at9/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.1.S1_at9/111+31492537..31495621expressed protein
LOC_Os01g54190Os.5530.3.S1_x_at7/111+31492537..31495621expressed protein
LOC_Os01g54190OsAffx.5404.1.S1_at6/111+31492537..31495621expressed protein
LOC_Os01g54190Os.33350.1.S1_x_at3/111+31492537..31495621expressed protein
LOC_Os01g54190Os.34819.2.S1_x_at2/111+31492537..31495621expressed protein
LOC_Os01g54190Os.33350.1.S1_at2/111+31492537..31495621expressed protein
LOC_Os01g54200Os.55324.1.S1_at5/111+31497377..31497561NA
LOC_Os01g54210Os.27911.2.S1_at11/111+31507044..31509304GATA zinc finger family protein, expressed
LOC_Os01g54210Os.27911.1.S1_at11/111+31507044..31509304GATA zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21631.1.S1_at--303--4151Chr01:31484708..31484732 (25 bp)
CGCGTGATTCGTCAGCGCTATGAAG
LOC_Os01g54170
OsAffx.21631.1.S1_at--561--6571Chr01:31484703..31484727 (25 bp)
GATTCGTCAGCGCTATGAAGGCGAC
LOC_Os01g54170
OsAffx.21631.1.S1_at--168--4811Chr01:31484692..31484716 (25 bp)
GCTATGAAGGCGACGGGCCGATACT
LOC_Os01g54170
OsAffx.21631.1.S1_at--369--691Chr01:31484685..31484709 (25 bp)
AGGCGACGGGCCGATACTCTCGGAC
LOC_Os01g54170
OsAffx.21631.1.S1_at--756--6471Chr01:31484673..31484697 (25 bp)
GATACTCTCGGACGACGCGCTACTG
LOC_Os01g54170
OsAffx.21631.1.S1_at--627--8111Chr01:31484664..31484688 (25 bp)
GGACGACGCGCTACTGCCAGCTGAT
LOC_Os01g54170
OsAffx.21631.1.S1_at--828--9911Chr01:31484653..31484677 (25 bp)
TACTGCCAGCTGATCCAGGCGCGGC
LOC_Os01g54170
OsAffx.21631.1.S1_at--777--8391Chr01:31484624..31484648 (25 bp)
GGCGCAGCGGCGGAACAACAGCAGC
LOC_Os01g54170
OsAffx.21631.1.S1_at--241--3951Chr01:31484554..31484578 (25 bp)
CGGAGGACTGCACCCCGACGTACAT
LOC_Os01g54170
OsAffx.21631.1.S1_at--603--8691Chr01:31484494..31484518 (25 bp)
TGTGCGGCATATGCGCGGAGGCGGT
LOC_Os01g54170
OsAffx.21631.1.S1_at--1052--2091Chr01:31484338..31484362 (25 bp)
ACATCGTCAGGATCAGCTGCCGCGG
LOC_Os01g54170
Target Sequence 
CGCGTGATTCGTCAGCGCTATGAAGGCGACGGGCCGATACTCTCGGACGACGCGCTACTGCCAGCTGATCCAGGCGCGGC
CGCCGGCGCAGCGGCGGAACAACAGCAGCAGCAGGATGAGGCACGGAGCGTGCGGTGCGAGTGCTGCGGGGTGGCGGAGG
ACTGCACCCCGACGTACATCGGCCGCGTGCGGGAGCGGTTCGACGGCAGGTGGGTGTGCGGCATATGCGCGGAGGCGGTG
AGCGAGCTGCGGAGGCGCGACCCGGCGCTGGCGGTGCGCGAGGCCGTGGCGTCCCACGCGGCGCTGTGCGCCGAGTTCAA
CGCCACCGTGCGCGTCAACCCGGCGCTCTGCCTCGTGCGCGGCATGCGCGACATCGTCAGGATCAGCTGCCGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis