Browse Element(s) Details


OsAffx.21694.3.S1_x_at

Description tigr:9640.m02244
TID=OsAffx.21694.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2361011/11hypothetical protein
LOC_Os01g580106/11ATP synthase a chain, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23610OsAffx.28576.1.S1_s_at11/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.21694.3.S1_x_at11/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.21694.3.S1_at9/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.32284.1.S1_x_at4/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.32305.1.S1_x_at2/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.32283.1.S1_at1/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.32283.1.A1_at1/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.32282.1.S1_at1/1112+13401406..13405646hypothetical protein
LOC_Os12g23610OsAffx.19957.1.S1_at1/1112+13401406..13405646hypothetical protein
LOC_Os12g23620OsAffx.19786.1.S1_at11/1112+13406735..13407264hypothetical protein
LOC_Os12g23630NANA12+13410274..13410561ATP synthase alpha chain, mitochondrial, putative
LOC_Os12g23640NANA12+13417496..13420422retrotransposon protein, putative, unclassified
LOC_Os12g23650NANA12+13421735..13422592retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23660OsAffx.1646.1.S1_x_at1/1112+13423367..13426858retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23670Os.50549.1.S1_at4/1112+13428473..13430948expressed protein
LOC_Os12g23670OsAffx.27496.2.S1_x_at1/1112+13428473..13430948expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015992biological_processproton transport
GO:0042776biological_processATP synthesis coupled proton transport (sensu Eukaryota)
GO:0045333biological_processcellular respiration
GO:0005739cellular_componentmitochondrion
GO:0016020cellular_componentmembrane
GO:0045255cellular_componenthydrogen-translocating F-type ATPase complex
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21694.3.S1_x_at--50--1271Chr12:13403310..13403334 (25 bp)
AGATATTGAGACACGACCTGCTCCC
LOC_Os12g23610
OsAffx.21694.3.S1_x_at--806--9292Chr12:13403291..13403313 (23 bp)
TCCCCTTCGAGTCCAAGTATCAGAA
LOC_Os12g23610
OsAffx.21694.3.S1_x_at--813--651Chr12:13401876..13401900 (25 bp)
ATGCAAGAGAGCCTTTTTCCGGGAA
LOC_Os12g23610
OsAffx.21694.3.S1_x_at--184--292Chr01:33876502..33876526 (25 bp)
ATAGTTATCCCTGGAGGCGGCGGAC
LOC_Os01g58010
OsAffx.21694.3.S1_x_at--115--7852Chr01:33876523..33876547 (25 bp)
GGACCAGTAATTTCAAGCCCCTTGG
LOC_Os01g58010
OsAffx.21694.3.S1_x_at--1153--552Chr01:33876615..33876639 (25 bp)
ATCCTTGTCTATGGCGGTAACTGTC
LOC_Os01g58010
OsAffx.21694.3.S1_x_at--736--7052Chr01:33876631..33876655 (25 bp)
GTAACTGTCGTTTTGGTGCCATCTT
LOC_Os01g58010
OsAffx.21694.3.S1_x_at--48--4972Chr01:33876797..33876821 (25 bp)
GCATCTCGGTCACTTTTACTTTTTC
LOC_Os01g58010
OsAffx.21694.3.S1_x_at--788--6791Chr12:13401499..13401523 (25 bp)
GTTATTTTGTAATCCCCAGGGTATG
LOC_Os12g23610
OsAffx.21694.3.S1_x_at--737--6472Chr01:33876846..33876870 (25 bp)
GATACCCTTTAGCTTCACAGTGACA
LOC_Os01g58010
OsAffx.21694.3.S1_x_at--98--10591Chr12:13401443..13401467 (25 bp)
TTCTCATTACTTTGGCTCTAGCAGG
LOC_Os12g23610
Target Sequence 
AGATATTGAGACACGACCTGCTCCCCTTCGAGTCCAAGTATCAGAATAGAGGCCGGGTGGGGAAGCAAAAGATGCAAGAG
AGCCTTTTTCCGGGAAGGAAGGGACGGGCTGAATGGAGGAATGGCGATATAGTTATCCCTGGAGGCGGCGGACCAGTAAT
TTCAAGCCCCTTGGATCAATTTTTCATTGATCCATTATTTGGTCTTGATATGGGTAACTTTTATTTATCATTCACAAATG
AATCCTTGTCTATGGCGGTAACTGTCGTTTTGGTGCCATCTTTATTTGGAGTTGTTACGAAAAAGGGCGGGGGAAAGTCA
GTGCCAAATGCATGGCAATCCTTGGTAGAGCTTATTTATGATTTCGTGCTGAACCTGGTAAACGAACAAATAGGTGGAAA
TGTTAAACAAAAGTTTTTCCCTCGCATCTCGGTCACTTTTACTTTTTCGTTATTTTGTAATCCCCAGGGTATGATACCCT
TTAGCTTCACAGTGACAAGTCATTTTCTCATTACTTTGGCTCTAGCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21694.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis