Browse Element(s) Details


OsAffx.21705.1.S1_x_at

Description gb:NM_190785.1
DB_XREF= gi:34908653
GEN=P0677H08.27
TID=OsAffx.21705.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0677H08.27 (P0677H08.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g427841/11DNA mismatch repair MutS family, putative, expressed
LOC_Os02g191501/11ATP-dependent Clp protease ATP-binding subunit clpX, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42740OsAffx.26434.1.S1_at11/114+25078094..25080475D-mannose binding lectin family protein
LOC_Os04g42750OsAffx.1353.1.S1_x_at1/114+25083899..25085737transposon protein, putative, unclassified
LOC_Os04g42760Os.53077.1.S1_at11/114+25088049..25089515sialyltransferase, putative, expressed
LOC_Os04g42770Os.47741.1.S1_x_at11/114+25095177..25101346expressed protein
LOC_Os04g42770Os.47741.2.S1_at10/114+25095177..25101346expressed protein
LOC_Os04g42784Os.49455.1.S1_at11/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784OsAffx.14245.1.S1_x_at10/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784Os.56006.1.S1_at1/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42784OsAffx.21705.1.S1_x_at1/114+25104548..25120934DNA mismatch repair MutS family, putative, expressed
LOC_Os04g42800Os.51212.1.S1_at11/114+25121281..25122895expressed protein
LOC_Os04g42810OsAffx.29600.2.S1_s_at11/114+25123866..25125657hAT family dimerisation domain containing protein
LOC_Os04g42810OsAffx.29600.1.S1_at4/114+25123866..25125657hAT family dimerisation domain containing protein
LOC_Os04g42820OsAffx.29599.1.S1_s_at11/114+25125796..25126708hypothetical protein
LOC_Os04g42820OsAffx.29599.2.S1_at8/114+25125796..25126708hypothetical protein
LOC_Os04g42830OsAffx.16663.3.S1_x_at11/114+25127784..25129225Transferase family protein
LOC_Os04g42830OsAffx.16663.1.S1_s_at4/114+25127784..25129225Transferase family protein
LOC_Os04g42830OsAffx.16663.1.S1_x_at3/114+25127784..25129225Transferase family protein
LOC_Os04g42840Os.17905.1.S1_at11/114+25130652..25141839HEAT repeat family protein, expressed
LOC_Os04g42850OsAffx.14246.1.S1_at10/114+25144087..25146592hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000002biological_processmitochondrial genome maintenance
GO:0006298biological_processmismatch repair
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0009507cellular_componentchloroplast
GO:0003684molecular_functiondamaged DNA binding
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21705.1.S1_x_at--812--7531Chr01:38036917..38036941 (25 bp)
GGGCCCACGAGGGAGCCAAGCGGAA
NONE
OsAffx.21705.1.S1_x_at--709--7651Chr01:38036885..38036909 (25 bp)
GGGATGTCGAGTGGGCCCCACCGTC
NONE
OsAffx.21705.1.S1_x_at--1076--7511Chr01:38032687..38032711 (25 bp)
GTGGCTTCGCACTGAAGCTAAGGCA
NONE
OsAffx.21705.1.S1_x_at--198--5111Chr01:38032679..38032703 (25 bp)
GCACTGAAGCTAAGGCAGCTCCAGC
NONE
OsAffx.21705.1.S1_x_at--306--9537Chr11:404756..404833 (25 bp)
TCTCAACTCCAACTTACCTAGAGCT
NONE
OsAffx.21705.1.S1_x_at--699--58910Chr11:12716426..12716669 (25 bp)
GAGCTGTGCCAAACGCGGCAGCGGC
NONE
OsAffx.21705.1.S1_x_at--750--1571Chr01:38032365..38032389 (25 bp)
AGCGGCGGACGTCGGTGGTGGGTGT
NONE
OsAffx.21705.1.S1_x_at--912--7471Chr01:38032318..38032342 (25 bp)
GTGGGCGGGACAGCGCACGGGCGCA
NONE
OsAffx.21705.1.S1_x_at--720--1912Chr04:5630592..5630612 (21 bp)
ACGGGCGGCGACTGGCAGGGATGAC
NONE
OsAffx.21705.1.S1_x_at--607--8352Chr04:5630551..5630571 (21 bp)
GGCGGAGCTCGCTCGTCCGCTATTG
NONE
OsAffx.21705.1.S1_x_at--830--9411Chr01:38032204..38032228 (25 bp)
TCGTCCGCTATTGCCGTGGAGCTCG
NONE
Target Sequence 
GGGCCCACGAGGGAGCCAAGCGGAAGGAATTGGGGATGTCGAGTGGGCCCCACCGTCGGCGTCCGTGTCGCCTACCGCGC
GGGGGCTGGAGGAGGAGGAGGGGGGCCACGTGGCTTCGCACTGAAGCTAAGGCAGCTCCAGCTCTCAACTCCAACTTACC
TAGAGCTGGAGCTGTGCCAAACGCGGCAGCGGCGGACGTCGGTGGTGGGTGTCGGTGGCAGCGGGCGGCGGCGCGTGGGC
GGGACAGCGCACGGGCGCACAGGCGGCGCGAGCGGGGACGACGAGCGGACGGCGCACGGGCGGCGACTGGCAGGGATGAC
GCGGGGGCGGGGACAGGGCGGAGCTCGCTCGTCCGCTATTGCCGTGGAGCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21705.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis