Browse Element(s) Details


OsAffx.21738.1.S1_at

Description gb:NM_190601.1
DB_XREF= gi:34908285
GEN=P0005H10.15
TID=OsAffx.21738.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0005H10.15 (P0005H10.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6289011/11prenylated rab acceptor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62840Os.14234.1.S1_at11/111+36722335..36725034mannose-1-phosphate guanyltransferase, putative, expressed
LOC_Os01g62850Os.19137.1.S1_at11/111+36725833..36728556integral membrane protein, putative, expressed
LOC_Os01g62860Os.42436.1.S1_at11/111+36730314..36734228oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62870Os.5560.1.S1_at11/111+36737563..36741458oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62880Os.7392.2.S1_x_at11/111+36744963..36746878oxidoreductase, aldo/keto reductase family protein, expressed
LOC_Os01g62890Os.49468.2.S1_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890OsAffx.21738.1.S1_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890Os.49468.2.S1_x_at11/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62890OsAffx.21738.1.S1_x_at10/111+36746876..36749715prenylated rab acceptor, putative, expressed
LOC_Os01g62900Os.33244.1.S2_at11/111+36757827..36767692Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os01g62900Os.33244.1.S1_at11/111+36757827..36767692Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os01g62900Os.10728.1.S1_at1/111+36757827..36767692Delta 1-pyrroline-5-carboxylate synthetase, putative, expressed
LOC_Os01g62910Os.42431.1.S1_at11/111+36765797..36769793pentatricopeptide, putative, expressed
LOC_Os01g62920Os.19639.1.S1_at11/111+36772211..36776800homeodomain protein JUBEL2, putative, expressed
LOC_Os01g62920Os.42388.1.S1_x_at1/111+36772211..36776800homeodomain protein JUBEL2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21738.1.S1_at--211--871Chr01:36747821..36747896 (25 bp)
AGGCCACCCTTAAGAGTCTCAGAAG
LOC_Os01g62890
OsAffx.21738.1.S1_at--315--4411Chr01:36747819..36747894 (25 bp)
GCCACCCTTAAGAGTCTCAGAAGAA
LOC_Os01g62890
OsAffx.21738.1.S1_at--428--2731Chr01:36747810..36747834 (25 bp)
AAGAGTCTCAGAAGAACGGGCTAAC
LOC_Os01g62890
OsAffx.21738.1.S1_at--402--1151Chr01:36747807..36747831 (25 bp)
AGTCTCAGAAGAACGGGCTAACAAC
LOC_Os01g62890
OsAffx.21738.1.S1_at--86--5371Chr01:36747800..36747824 (25 bp)
GAAGAACGGGCTAACAACATTGCTG
LOC_Os01g62890
OsAffx.21738.1.S1_at--115--5451Chr01:36747797..36747821 (25 bp)
GAACGGGCTAACAACATTGCTGATA
LOC_Os01g62890
OsAffx.21738.1.S1_at--534--1911Chr01:36747795..36747819 (25 bp)
ACGGGCTAACAACATTGCTGATATT
LOC_Os01g62890
OsAffx.21738.1.S1_at--359--8311Chr01:36747792..36747816 (25 bp)
GGCTAACAACATTGCTGATATTTGC
LOC_Os01g62890
OsAffx.21738.1.S1_at--142--71Chr01:36747782..36747806 (25 bp)
ATTGCTGATATTTGCAGACCTGTCA
LOC_Os01g62890
OsAffx.21738.1.S1_at--45--4751Chr01:36747779..36747803 (25 bp)
GCTGATATTTGCAGACCTGTCATTC
LOC_Os01g62890
OsAffx.21738.1.S1_at--400--8831Chr01:36747777..36747801 (25 bp)
TGATATTTGCAGACCTGTCATTCGT
LOC_Os01g62890
Target Sequence 
AGGCCACCCTTAAGAGTCTCAGAAGAACGGGCTAACAACATTGCTGATATTTGCAGACCTGTCATTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis