Browse Element(s) Details


OsAffx.21779.1.S1_at

Description gb:NM_190351.1
DB_XREF= gi:34907785
GEN=P0703B11.13
TID=OsAffx.21779.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0703B11.13 (P0703B11.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1486011/11retrotransposon protein, putative, unclassified
LOC_Os05g2726011/11retrotransposon protein, putative, unclassified
LOC_Os01g6056011/11retrotransposon protein, putative, unclassified
LOC_Os05g5189010/11retrotransposon protein, putative, unclassified
LOC_Os05g1831010/11retrotransposon protein, putative, unclassified
LOC_Os09g171709/11retrotransposon protein, putative, unclassified
LOC_Os04g168608/11retrotransposon protein, putative, unclassified
LOC_Os04g210906/11retrotransposon protein, putative, unclassified
LOC_Os06g175402/11Zinc knuckle family protein
LOC_Os03g337901/11retrotransposon protein, putative, unclassified
LOC_Os08g125601/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g14294Os.10827.1.S1_x_at10/1110+7506475..7510736transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14294Os.46055.2.S1_x_at5/1110+7506475..7510736transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g14800NANA10+7512829..7513254hypothetical protein
LOC_Os10g14814Os.8788.1.S1_at6/1110+7516535..7522112Riboflavin kinase/FAD synthetase family protein
LOC_Os10g14814Os.20353.1.S2_at4/1110+7516535..7522112Riboflavin kinase/FAD synthetase family protein
LOC_Os10g14830NANA10+7526009..7526596retrotransposon protein, putative, unclassified
LOC_Os10g14840NANA10+7526991..7528088hypothetical protein
LOC_Os10g14850OsAffx.15708.1.S1_at1/1110+7529548..7530778hypothetical protein
LOC_Os10g14860OsAffx.21779.1.S1_at11/1110+7532524..7534123retrotransposon protein, putative, unclassified
LOC_Os10g14860OsAffx.21779.3.S1_at2/1110+7532524..7534123retrotransposon protein, putative, unclassified
LOC_Os10g14870Os.5438.1.S1_at11/1110+7534704..7536767heavy metal-associated domain containing protein, expressed
LOC_Os10g14880OsAffx.303.1.S1_at11/1110+7538556..7538897retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g14889Os.41248.2.A1_at4/1110+7545418..7548042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14889Os.39814.1.S1_at3/1110+7545418..7548042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14889Os.41248.5.S1_x_at1/1110+7545418..7548042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14900OsAffx.302.1.S1_at11/1110+7552652..7553059retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21779.1.S1_at--870--7997Chr10:7533523..7533547 (25 bp)
GGATGTTCATAAGTCTCTGCTTGTT
LOC_Os10g14860
OsAffx.21779.1.S1_at--769--357Chr10:7533531..7533555 (25 bp)
ATAAGTCTCTGCTTGTTCCCGTTTC
LOC_Os10g14860
OsAffx.21779.1.S1_at--999--10637Chr10:7533546..7533570 (25 bp)
TTCCCGTTTCAGCTGCCAAAGTGCA
LOC_Os10g14860
OsAffx.21779.1.S1_at--655--34110Chr10:7533666..7533690 (25 bp)
CAGCAAAGGCAGTTCGTCGTGATTC
LOC_Os10g14860
OsAffx.21779.1.S1_at--1011--39910Chr10:7533680..7533704 (25 bp)
CGTCGTGATTCACAAGTTACCAGCA
LOC_Os10g14860
OsAffx.21779.1.S1_at--538--3036Chr10:7533973..7533997 (25 bp)
AATCTGGAGGCCCATCGACAAATCA
LOC_Os10g14860
OsAffx.21779.1.S1_at--881--4776Chr10:7534000..7534024 (25 bp)
GCTCGGTAACCCCACGGGCAAGAAG
LOC_Os10g14860
OsAffx.21779.1.S1_at--709--8218Chr10:7534016..7534040 (25 bp)
GGCAAGAAGATCCTACCCGTTACAG
LOC_Os10g14860
OsAffx.21779.1.S1_at--496--578Chr10:7534025..7534049 (25 bp)
ATCCTACCCGTTACAGCTGACAAGA
LOC_Os10g14860
OsAffx.21779.1.S1_at--71--1617Chr10:7534039..7534063 (25 bp)
AGCTGACAAGACAGTTGCCCCTCCA
LOC_Os10g14860
OsAffx.21779.1.S1_at--994--9219Chr10:7534060..7534084 (25 bp)
TCCACCATCGAAGATCAACAAGCAG
LOC_Os10g14860
Target Sequence 
GGATGTTCATAAGTCTCTGCTTGTTCCCGTTTCAGCTGCCAAAGTGCATAATCAGNAGCCTGCACCNCGGGACCAAGCAA
GTCGATTCTGNCGNAACTGTCGTAAGCCAGGACATCGTTTCAGTGATTGTCCTCTTCCAAGAGCAGCAAAGGCAGTTCGT
CGTGATTCACAAGTTACCAGCANTGCCCATGACACCAATCGACACCTGAATGTGCAACCTCCGCCNCAACGGATTATCGT
CAAGGGCACCGTCAAAGGTCGCATTGTTCCACCGGCAANCGTTTCAAGCCTACAGCACCAACGCCAGCAGGGTAAGCAAT
GCCAGGAGAACAACAGCTCGCTACAGCTACAAAGAGGNGGTACGCTCCTTCGTCAGCACCCGCGGCAAGTGTTGTCAGCA
CCAGGTCGNNCAACTGTTGTCAGNTCTAGCAATGCACCTNGTATTGCTCCAATCTGGAGGCCCATCGACAAATCACCGCT
CGGTAACCCCACGGGCAAGAAGATCCTACCCGTTACAGCTGACAAGACAGTTGCCCCTCCACCATCGAAGATCAACAAGC
AG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis