Browse Element(s) Details


OsAffx.21813.1.S1_at

Description gb:NM_190185.1
DB_XREF= gi:34907453
GEN=P0434C04.9
TID=OsAffx.21813.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0434C04.9 (P0434C04.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g663403/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66290Os.28021.1.S1_a_at11/111+38827729..38831915Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os01g66300Os.28114.1.S1_at11/111+38835972..38840318KH domain-containing quaking protein, putative, expressed
LOC_Os01g66300Os.28114.2.S1_at11/111+38835972..38840318KH domain-containing quaking protein, putative, expressed
LOC_Os01g66310Os.47751.1.A1_at6/111+38843266..38843686expressed protein
LOC_Os01g66320OsAffx.21814.1.A1_at9/111+38844351..38847071expressed protein
LOC_Os01g66330Os.24870.1.S1_s_at11/111+38847481..38853236ATP-dependent Clp protease ATP-binding subunit ClpX1, putative, expressed
LOC_Os01g66330Os.24870.1.S1_at11/111+38847481..38853236ATP-dependent Clp protease ATP-binding subunit ClpX1, putative, expressed
LOC_Os01g66340OsAffx.21813.1.S1_at3/111+38854810..38855034hypothetical protein
LOC_Os01g66350Os.8506.1.S1_at11/111+38861672..38867180expressed protein
LOC_Os01g66350Os.51330.1.S1_at1/111+38861672..38867180expressed protein
LOC_Os01g66360NANA1+38868667..388724822-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplast precursor, putative, expressed
LOC_Os01g66379Os.6029.1.S1_at11/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66379Os.54153.1.S1_at1/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66379Os.13704.1.S1_x_at1/111+38872616..38885230peptide chain release factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21813.1.S1_at--764--3811Chr01:38854698..38854722 (25 bp)
CTCCTCATGGTTACCAGCGTGGTCT
NONE
OsAffx.21813.1.S1_at--886--9251Chr01:38854699..38854723 (25 bp)
TCCTCATGGTTACCAGCGTGGTCTC
NONE
OsAffx.21813.1.S1_at--1052--9612Chr01:38854702..38854726 (25 bp)
TCATGGTTACCAGCGTGGTCTCCGA
NONE
OsAffx.21813.1.S1_at--573--812Chr01:38854704..38854728 (25 bp)
ATGGTTACCAGCGTGGTCTCCGACG
NONE
OsAffx.21813.1.S1_at--1153--7872Chr01:38854706..38854730 (25 bp)
GGTTACCAGCGTGGTCTCCGACGGC
NONE
OsAffx.21813.1.S1_at--403--7811Chr01:38854738..38854762 (25 bp)
GGTCGGGGCCATTTCCAGCTGCAGC
NONE
OsAffx.21813.1.S1_at--965--7551Chr01:38854743..38854767 (25 bp)
GGGCCATTTCCAGCTGCAGCTCCGT
NONE
OsAffx.21813.1.S1_at--1099--5051Chr01:38854792..38854816 (25 bp)
GCAGCGGGACTAGCCGCGATGTTGG
NONE
OsAffx.21813.1.S1_at--656--4611Chr01:38854934..38854958 (25 bp)
GCGAGGAGTGCGACATGTTCAACCC
LOC_Os01g66340
OsAffx.21813.1.S1_at--198--4071Chr01:38854935..38854959 (25 bp)
CGAGGAGTGCGACATGTTCAACCCG
LOC_Os01g66340
OsAffx.21813.1.S1_at--361--991Chr01:38854937..38854961 (25 bp)
AGGAGTGCGACATGTTCAACCCGCT
LOC_Os01g66340
Target Sequence 
CTCCTCATGGTTACCAGCGTGGTCTCCGACGGCTCGCCGGGGTCGGGGCCATTTCCAGCTGCAGCTCCGTCCACTCGCGC
CGTTCAGCACCGGGGCAGCGGGACTAGCCGCGATGTTGGCCGCCGGCGCCGCGCTGCTCGTGCTCGTGTGCGCCGCGTCG
CTCCGCTGCTCGACCGCGCCCAAGAAGCTCCTCAGTGGCGGGGTCTCCATCGAGGAGCCGCGCGCCGGCGGCGGCGGCGA
GGAGTGCGACATGTTCAACCCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21813.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis