Browse Element(s) Details


OsAffx.21918.1.S1_x_at

Description tigr:9629.m07403
TID=OsAffx.21918.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7463011/11hypothetical protein
LOC_Os01g186701/11CjMDR1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74600Os.33222.1.S1_at11/111+43522968..43525515Vegetative storage protein, putative, expressed
LOC_Os01g74610Os.19202.1.S1_a_at11/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74610Os.53769.1.S1_x_at9/111+43529387..43542092Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g74620Os.38089.3.S1_at10/111+43543913..43544731hypothetical protein
LOC_Os01g74630OsAffx.21918.1.S1_x_at11/111+43547070..43548102hypothetical protein
LOC_Os01g74640Os.26470.2.A1_x_at11/111+43553176..43557178Mitochondrial carrier protein, expressed
LOC_Os01g74650Os.6173.2.S1_x_at11/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g74650Os.6173.1.S1_at11/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g74650Os.47876.1.A1_x_at10/111+43558783..43565354Cysteine synthase, chloroplast precursor, putative, expressed
LOC_Os01g74660Os.5806.1.S1_at11/111+43571066..43572250cinnamoyl-CoA reductase family, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009926biological_processauxin polar transport
GO:0016020cellular_componentmembrane
GO:0008559molecular_functionxenobiotic-transporting ATPase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21918.1.S1_x_at--193--7371Chr01:43547608..43547632 (25 bp)
GTGACATGCTGGATGATCCCCGGAG
LOC_Os01g74630
OsAffx.21918.1.S1_x_at--283--2111Chr01:43547605..43547629 (25 bp)
ACATGCTGGATGATCCCCGGAGAGC
LOC_Os01g74630
OsAffx.21918.1.S1_x_at--787--7911Chr01:43547568..43547592 (25 bp)
GGATACGGAACCTGTGCCTCAAGAC
LOC_Os01g74630
OsAffx.21918.1.S1_x_at--241--2631Chr01:43547560..43547584 (25 bp)
AACCTGTGCCTCAAGACCATCCTGA
LOC_Os01g74630
OsAffx.21918.1.S1_x_at--1029--552Chr01:43547542..43547566 (25 bp)
ATCCTGAGGCAGGAGATCGCCTTCT
LOC_Os01g74630
OsAffx.21918.1.S1_x_at--798--6191Chr01:43547537..43547561 (25 bp)
GAGGCAGGAGATCGCCTTCTTCGTC
LOC_Os01g74630
OsAffx.21918.1.S1_x_at--212--9451Chr01:43547487..43547511 (25 bp)
TCGGCAGGATGTCCGGCGACACCAT
LOC_Os01g74630
OsAffx.21918.1.S1_x_at--646--7991Chr01:43547481..43547505 (25 bp)
GGATGTCCGGCGACACCATGCTCAT
LOC_Os01g74630
OsAffx.21918.1.S1_x_at--641--631Chr01:43547464..43547488 (25 bp)
ATGCTCATACAGGACGCCATGGCGG
LOC_Os01g74630
OsAffx.21918.1.S1_x_at--1149--7611Chr01:43547290..43547314 (25 bp)
GGGACAGCGTCATCATCGTCGACAA
LOC_Os01g74630
OsAffx.21918.1.S1_x_at--703--6691Chr01:43547214..43547238 (25 bp)
GTTCGAGCTCATCCGCGGGCACGAA
LOC_Os01g74630
Target Sequence 
GTGACATGCTGGATGATCCCCGGAGAGCGGCAGGCGGCGAGGATACGGAACCTGTGCCTCAAGACCATCCTGAGGCAGGA
GATCGCCTTCTTCGTCAAGTACACCAACACCGGCGAGGTCGTCGGCAGGATGTCCGGCGACACCATGCTCATACAGGACG
CCATGGCGGCGGCGACGGCGGCGCNNNNNNNNNNNNNNNNNNNNNNNCCGCCGCCGCCGCGCGCCGCCTCCCCGTCGGCG
TCCGCAAGCCGCCCCTCCACGTCGTCGTCACGGGGGAGCGGGCTTCATCAGCAGCCACCTCGTCGACGAGCTCCCGCGGG
GACAGCGTCATCATCGTCGACAACCTCTTCACGGGGCGCAAGGAGAACTTCGCGCACCACCTCGCCGACCCGCGGTTCGA
GCTCATCCGCGGGCACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21918.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis