Browse Element(s) Details


OsAffx.21941.1.S1_s_at

Description gb:NM_189302.1
DB_XREF= gi:34905687
GEN=P0475H04.31
TID=OsAffx.21941.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative myb-related protein P (P0475H04.31), mRNA.
PROD=putative myb-related protein P
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1997011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g19960Os.46306.1.S1_x_at6/111+11322550..11331709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19960Os.45976.1.S1_at5/111+11322550..11331709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19960Os.45976.1.S1_x_at3/111+11322550..11331709transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g19970OsAffx.21941.1.S1_s_at11/111+11347388..11353401Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g19980OsAffx.11125.1.S1_at11/111+11354930..11356720hypothetical protein
LOC_Os01g19990Os.28809.1.S1_at11/111+11361133..11362122expressed protein
LOC_Os01g20000Os.34436.1.S1_at1/111+11363794..11364042hypothetical protein
LOC_Os01g20010NANA1+11366371..11366637hypothetical protein
LOC_Os01g20020OsAffx.11126.1.S1_at9/111+11369571..11371214hypothetical protein
LOC_Os01g20030NANA1+11375766..11376503expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009813biological_processflavonoid biosynthesis
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21941.1.S1_s_at--238--1451Chr01:11352951..11352975 (25 bp)
AGAAGCTGCGCACAATGACGACGGC
LOC_Os01g19970
OsAffx.21941.1.S1_s_at--130--4951Chr01:11352995..11353019 (25 bp)
GCATTGACAACGTCTCGGCAGCTAG
LOC_Os01g19970
OsAffx.21941.1.S1_s_at--635--3391Chr01:11353013..11353037 (25 bp)
CAGCTAGCCACAGCCACAGGGAGGA
LOC_Os01g19970
OsAffx.21941.1.S1_s_at--12--5891Chr01:11353050..11353074 (25 bp)
GAGCGCCAGTGGTCTCACATCAGAT
LOC_Os01g19970
OsAffx.21941.1.S1_s_at--629--4551Chr01:11353088..11353112 (25 bp)
GCCCACTGGGCCTAAGCGAGGAGAT
LOC_Os01g19970
OsAffx.21941.1.S1_s_at--813--1771Chr01:11353131..11353155 (25 bp)
ACCGGTGAGCCCAAAGCCTGAGGTG
LOC_Os01g19970
OsAffx.21941.1.S1_s_at--274--4351Chr01:11353158..11353182 (25 bp)
CCAGGATGGGTCTTCTGCAGAGAGT
LOC_Os01g19970
OsAffx.21941.1.S1_s_at--909--3811Chr01:11353185..11353209 (25 bp)
CTGCTGTGGGCCTAGTGGATCCAGT
LOC_Os01g19970
OsAffx.21941.1.S1_s_at--640--3251Chr01:11353214..11353238 (25 bp)
CAACCGAGGCTGTGGGCCAGGACAT
LOC_Os01g19970
OsAffx.21941.1.S1_s_at--465--8651Chr01:11353268..11353292 (25 bp)
TGGGCCTGGACGATGGCTTCGCCAA
LOC_Os01g19970
OsAffx.21941.1.S1_s_at--934--6231Chr01:11353279..11353303 (25 bp)
GATGGCTTCGCCAACGATGACATGT
LOC_Os01g19970
Target Sequence 
AGAAGCTGCGCACAATGACGACGGCGGCGGCGGCGGCGGCGGCGGCATTGACAACGTCTCGGCAGCTAGCCACAGCCACA
GGGAGGAGCAGGCACAGGCGAGCGCCAGTGGTCTCACATCAGATGGGCTCGAGGAGGGCCCACTGGGCCTAAGCGAGGAG
ATGGTGAGTGGGCCCGTGGGACCGGTGAGCCCAAAGCCTGAGGTGGGCCAGGATGGGTCTTCTGCAGAGAGTGGCTGCTG
TGGGCCTAGTGGATCCAGTGGCCCAACCGAGGCTGTGGGCCAGGACATGGGCGACAAGTCCATGGACTGGGACCTGGTGG
GCCTGGACGATGGCTTCGCCAACGATGACATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21941.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis