Browse Element(s) Details


OsAffx.2198.3.S1_at

Description tigr:9632.m05087
TID=OsAffx.2198.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5251011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52479Os.47617.1.S1_at11/114+30984708..30995628expressed protein
LOC_Os04g52479OsAffx.14377.1.S1_at11/114+30984708..30995628expressed protein
LOC_Os04g52479Os.45957.3.S1_x_at11/114+30984708..30995628expressed protein
LOC_Os04g52479Os.45957.4.S1_x_at4/114+30984708..30995628expressed protein
LOC_Os04g52479Os.49445.1.S1_at2/114+30984708..30995628expressed protein
LOC_Os04g52500Os.16854.1.S1_at11/114+30996071..31000524lecithine cholesterol acyltransferase, putative, expressed
LOC_Os04g52510OsAffx.2198.3.S1_at11/114+31004330..31005478hypothetical protein
LOC_Os04g52520OsAffx.4156.1.S1_at11/114+31006042..31011501hypothetical protein
LOC_Os04g52520Os.54371.1.S1_x_at1/114+31006042..31011501hypothetical protein
LOC_Os04g52530Os.17258.1.S1_at7/114+31011862..31012902heavy metal-associated domain containing protein
LOC_Os04g52530OsAffx.23171.1.S1_at3/114+31011862..31012902heavy metal-associated domain containing protein
LOC_Os04g52540Os.50333.1.S1_at11/114+31020119..31024364Piwi domain containing protein, expressed
LOC_Os04g52550Os.55120.1.S1_at10/114+31025382..31030546Piwi domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2198.3.S1_at--683--8271Chr04:31004797..31004821 (25 bp)
GGCTCTCAGGCCATAACGACGTACT
LOC_Os04g52510
OsAffx.2198.3.S1_at--1084--3751Chr04:31004795..31004819 (25 bp)
CTCTCAGGCCATAACGACGTACTTG
LOC_Os04g52510
OsAffx.2198.3.S1_at--350--8431Chr04:31004789..31004813 (25 bp)
GGCCATAACGACGTACTTGCTGGGA
LOC_Os04g52510
OsAffx.2198.3.S1_at--756--3531Chr04:31004786..31004810 (25 bp)
CATAACGACGTACTTGCTGGGAAAA
LOC_Os04g52510
OsAffx.2198.3.S1_at--551--8551Chr04:31004702..31004769 (25 bp)
TGGAGAGGATGAAATCGCAGTGAAC
LOC_Os04g52510
OsAffx.2198.3.S1_at--811--6311Chr04:31004695..31004719 (25 bp)
GATGAAATCGCAGTGAACAGCAGAT
LOC_Os04g52510
OsAffx.2198.3.S1_at--846--511Chr04:31004689..31004713 (25 bp)
ATCGCAGTGAACAGCAGATTGGTTG
LOC_Os04g52510
OsAffx.2198.3.S1_at--720--5011Chr04:31004686..31004710 (25 bp)
GCAGTGAACAGCAGATTGGTTGGCT
LOC_Os04g52510
OsAffx.2198.3.S1_at--307--4811Chr04:31004622..31004646 (25 bp)
GCTCTTCACCGCTGCGGCATAGACC
LOC_Os04g52510
OsAffx.2198.3.S1_at--633--4951Chr04:31004606..31004630 (25 bp)
GCATAGACCTGCCAACGCCGTGGTG
LOC_Os04g52510
OsAffx.2198.3.S1_at--1156--9971Chr04:31004603..31004627 (25 bp)
TAGACCTGCCAACGCCGTGGTGTTC
LOC_Os04g52510
Target Sequence 
GGCTCTCAGGCCATAACGACGTACTTGCTGGGAAAACCGCAACAGCAGTTGGTGGAGAGGATGAAATCGCAGTGAACAGC
AGATTGGTTGGCTCGCGGGGCCCTTCGCCGTCGCCGTCGACCTCCTCGCGCCGCTCTTCACCGCTGCGGCATAGACCTGC
CAACGCCGTGGTGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2198.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis