Browse Element(s) Details


OsAffx.22079.1.S1_x_at

Description gb:NM_188617.1
DB_XREF= gi:34904317
TID=OsAffx.22079.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g130404/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13010NANA1+7232814..7233252hypothetical protein
LOC_Os01g13020OsAffx.22080.1.S1_at11/111+7236523..7237759hypothetical protein
LOC_Os01g13024NANA1+7241784..7242805expressed protein
LOC_Os01g13030Os.12733.1.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.2.S1_at11/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030Os.12733.3.S1_x_at10/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13030OsAffx.22446.1.S1_x_at4/111+7246572..7251431Auxin-responsive protein IAA8, putative, expressed
LOC_Os01g13040OsAffx.22079.1.S1_x_at4/111+7256673..7257227expressed protein
LOC_Os01g13040OsAffx.22079.1.S1_at3/111+7256673..7257227expressed protein
LOC_Os01g13050OsAffx.24964.2.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_s_at11/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.1.S1_x_at6/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_x_at5/111+7259824..7260645hypothetical protein
LOC_Os01g13050OsAffx.24964.2.S1_at1/111+7259824..7260645hypothetical protein
LOC_Os01g13060Os.10055.2.S1_at10/111+7262030..7268612Casein kinase I homolog hhp1, putative, expressed
LOC_Os01g13070OsAffx.9884.1.S1_at10/111+7272821..7274774expressed protein
LOC_Os01g13080Os.46916.1.S1_s_at11/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13080Os.46916.1.S1_at5/111+7275547..727704360S acidic ribosomal protein P3, putative, expressed
LOC_Os01g13090OsAffx.23222.1.S1_s_at11/111+7278814..7282793expressed protein
LOC_Os01g13090Os.4482.1.A1_at11/111+7278814..7282793expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22079.1.S1_x_at--1157--4511Chr01:7257122..7257146 (25 bp)
GCCGCAGTACTACTCCTGGATGAGC
LOC_Os01g13040
OsAffx.22079.1.S1_x_at--120--4131Chr01:7257124..7257148 (25 bp)
CGCAGTACTACTCCTGGATGAGCTC
LOC_Os01g13040
OsAffx.22079.1.S1_x_at--980--2011Chr01:7257130..7257154 (25 bp)
ACTACTCCTGGATGAGCTCCAGCTA
LOC_Os01g13040
OsAffx.22079.1.S1_x_at--811--691Chr01:7257141..7257165 (25 bp)
ATGAGCTCCAGCTACGACGGCTACT
LOC_Os01g13040
OsAffx.22079.1.S1_x_at--1151--5191Chr01:7257259..7257598 (25 bp)
GCAATTTTTTACTACTGCATCCACC
NONE
OsAffx.22079.1.S1_x_at--851--1731Chr01:7257603..7257627 (25 bp)
ACCATCTCCTCCAATGCGGCGAAGG
NONE
OsAffx.22079.1.S1_x_at--495--451Chr01:7257606..7257630 (25 bp)
ATCTCCTCCAATGCGGCGAAGGTGG
NONE
OsAffx.22079.1.S1_x_at--460--5751Chr01:7257652..7257676 (25 bp)
GACGGGCAGGCGGAGAACAGCGAGC
NONE
OsAffx.22079.1.S1_x_at--450--7111Chr01:7257878..7257902 (25 bp)
GTCAGCGCCGCACGGAGGTCGGCAG
NONE
OsAffx.22079.1.S1_x_at--91--3351Chr01:7257888..7257912 (25 bp)
CACGGAGGTCGGCAGCCGTGACGGG
NONE
OsAffx.22079.1.S1_x_at--1136--4551Chr01:7258004..7258028 (25 bp)
GCGGAGGCCGGCACCTGGCTTGCTG
NONE
Target Sequence 
GCCGCAGTACTACTCCTGGATGAGCTCCAGCTACGACGGCTACTCCGGCGGCCGGAGCAGCGCCGGGAGCTCGTCGGAGG
AGCTGGATTTGGAGCTGAGATTGTANTTATTACAGCAATTTTTTACTACTGCATCCACCCCACACCATCTCCTCCAATGC
GGCGAAGGTGGACGGCGGGCACGCGAGGCGACGACGGGCAGGCGGAGAACAGCGAGCGGCGGCGGCGGCGCCGAGCCTCG
CCACGCGGAGGCCGGCGGCCGCGGCGAGCCGAGGCGGCAGGCTGCGCCGCGCGGAGGCCAGCGGCCGCGGCGAGCTGAGG
CGGCGGCCTGCGCTGGCGCCGCGCGGAGGCCGGCGGGCGGCGCCCCGCGGAGGCCGGCGGGCGGCGTCGAACGGAGGCGG
CGCCGCGTGGAGGCGGCGGTCAGCGCCGCACGGAGGTCGGCAGCCGTGACGGGCCGAGGCAGCGGGCGGCGCCGAGCGGA
GGCGGCAGCCGGCGCCGCACGGAGGCCGGCGGCCGCGACGAGCCGAGGCGGCGGGAGGCGCTGGGCGGAGGCCGGCACCT
GGCTTGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22079.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis