Browse Element(s) Details


OsAffx.22094.1.S1_at

Description gb:NM_188542.1
DB_XREF= gi:34904167
GEN=P0492F05.8
TID=OsAffx.22094.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0492F05.8 (P0492F05.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g260401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g429901/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g25980OsAffx.32056.1.S1_at11/1110+13125906..13130378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25980OsAffx.32056.1.S1_x_at10/1110+13125906..13130378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25980OsAffx.30536.1.S1_x_at1/1110+13125906..13130378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g25990OsAffx.20370.1.S1_at11/1110+13131377..13132303retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g26000OsAffx.8150.1.S1_at11/1110+13132783..13133229hypothetical protein
LOC_Os10g26010Os.46333.1.S1_at11/1110+13136168..13137937Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os10g26010Os.46333.1.S1_x_at11/1110+13136168..13137937Cys/Met metabolism PLP-dependent enzyme family protein, expressed
LOC_Os10g26020NANA10+13141522..13141989retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26030OsAffx.20369.1.S1_at11/1110+13142778..13146554retrotransposon protein, putative, unclassified
LOC_Os10g26040Os.46012.2.S1_x_at9/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.46012.3.S1_x_at6/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.27088.1.A1_x_at3/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040Os.45902.1.A1_x_at2/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26040OsAffx.22094.1.S1_at1/1110+13152703..13158814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g26050Os.26721.1.S1_at11/1110+13161357..13165343methionyl-tRNA synthetase, putative, expressed
LOC_Os10g26060Os.12807.1.S1_x_at11/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060Os.12807.2.S1_x_at11/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060Os.22346.2.S1_x_at2/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26060OsAffx.27508.71.S1_s_at2/1110+13165843..13167972Glutelin type-A 2 precursor, putative, expressed
LOC_Os10g26070OsAffx.20368.1.S1_at11/1110+13170422..13172377pentatricopeptide, putative
LOC_Os10g26080Os.27435.1.S1_x_at7/1110+13177175..13179828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26080Os.46334.1.S1_x_at3/1110+13177175..13179828transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26090OsAffx.22421.1.S1_at3/1110+13183434..13186468transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26090OsAffx.22421.2.S1_at3/1110+13183434..13186468transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22094.1.S1_at--1005--7271Chr01:6875131..6875155 (25 bp)
GTGCGGTGGTCCAACCAGCAGGACA
NONE
OsAffx.22094.1.S1_at--327--2651Chr01:6875143..6875167 (25 bp)
AACCAGCAGGACACCGACGGTCAGA
NONE
OsAffx.22094.1.S1_at--1069--3416Chr12:15521353..15521513 (25 bp)
CAGACCGGTGGCATCGCTTCGGTCA
NONE
OsAffx.22094.1.S1_at--752--8371Chr01:6875193..6875217 (25 bp)
GGCGACCGCGACAGAAGGCAACGAC
NONE
OsAffx.22094.1.S1_at--1068--5131Chr01:6875210..6875234 (25 bp)
GCAACGACGCTTCAGGACGGTCAGA
NONE
OsAffx.22094.1.S1_at--330--2551Chr01:6875245..6875269 (25 bp)
AACTCCGGTCAGATCACGCTGTTAG
NONE
OsAffx.22094.1.S1_at--435--1831Chr01:6875260..6875284 (25 bp)
ACGCTGTTAGAACGGCAGACCTACT
NONE
OsAffx.22094.1.S1_at--817--5451Chr01:6875269..6875293 (25 bp)
GAACGGCAGACCTACTTCGGTCAGA
NONE
OsAffx.22094.1.S1_at--322--7111Chr01:6875288..6875312 (25 bp)
GTCAGACCGACATCCGTCGATTACT
NONE
OsAffx.22094.1.S1_at--150--5651Chr01:6875296..6875320 (25 bp)
GACATCCGTCGATTACTAAAAGTTT
NONE
OsAffx.22094.1.S1_at--824--7651Chr01:6875928..6875952 (25 bp)
GGGATCTGGGACCTCAAATCAAATC
NONE
Target Sequence 
GTGCGGTGGTCCAACCAGCAGGACACCGACGGTCAGACCGGTGGCATCGCTTCGGTCAGACCGGCGACCGCGACAGAAGG
CAACGACGCTTCAGGACGGTCAGACCGGGAGATCAACTCCGGTCAGATCACGCTGTTAGAACGGCAGACCTACTTCGGTC
AGACCGACATCCGTCGATTACTAAAAGTTTTGGTTTTGGGGATCTGGGACCTCAAATCAAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22094.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis