Browse Element(s) Details


OsAffx.22146.1.S1_x_at

Description tigr:9629.m00976
TID=OsAffx.22146.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1026011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g10219NANA1+5373117..5373358NA
LOC_Os01g10230NANA1+5381041..5381619hypothetical protein
LOC_Os01g10240OsAffx.10993.1.S1_at11/111+5383797..5384930organic cation transporter, putative, expressed
LOC_Os01g10240OsAffx.10993.1.S1_x_at11/111+5383797..5384930organic cation transporter, putative, expressed
LOC_Os01g10240OsAffx.10993.2.S1_x_at1/111+5383797..5384930organic cation transporter, putative, expressed
LOC_Os01g10250Os.9487.1.S1_a_at11/111+5386541..5391214hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g10260OsAffx.22146.1.S1_x_at11/111+5398203..5398817expressed protein
LOC_Os01g10270Os.29966.1.S1_at2/111+5400104..5401369hypothetical protein
LOC_Os01g10280Os.14917.2.S1_x_at11/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.1.S1_x_at11/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.2.S1_at10/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10280Os.14917.1.S1_at10/111+5402850..5409570Phosphoribosylaminoimidazole carboxylase, chloroplast precursor, putative, expressed
LOC_Os01g10290Os.27665.1.S1_at11/111+5410397..5413668Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os01g10300OsAffx.23184.1.S1_at11/111+5413986..5415547expressed protein
LOC_Os01g10310OsAffx.1977.1.S1_x_at10/111+5420861..5421373hypothetical protein
LOC_Os01g10320Os.26565.3.S1_at11/111+5423343..5427416class III HD-Zip protein 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22146.1.S1_x_at--382--1451Chr01:5398708..5398732 (25 bp)
AGAAGCCGCGGAGGATCTCGATGGA
LOC_Os01g10260
OsAffx.22146.1.S1_x_at--267--3911Chr01:5398658..5398682 (25 bp)
CTGGCCCTGGAGCTCACCAAGAAGC
LOC_Os01g10260
OsAffx.22146.1.S1_x_at--111--8551Chr01:5398651..5398675 (25 bp)
TGGAGCTCACCAAGAAGCAGCAGGT
LOC_Os01g10260
OsAffx.22146.1.S1_x_at--284--5971Chr01:5398592..5398616 (25 bp)
GAGAAGCTGCCGGAGATCACGGAGC
LOC_Os01g10260
OsAffx.22146.1.S1_x_at--164--7251Chr01:5398487..5398511 (25 bp)
GTCCGGGAGCGCTACTGCGGGCGGT
LOC_Os01g10260
OsAffx.22146.1.S1_x_at--1119--6211Chr01:5398427..5398451 (25 bp)
GAGGCCGACAGGAGATGCCGCCACG
LOC_Os01g10260
OsAffx.22146.1.S1_x_at--666--3251Chr01:5398314..5398338 (25 bp)
CAACCCGGTGCTGATGCAGACGGAG
LOC_Os01g10260
OsAffx.22146.1.S1_x_at--996--4411Chr01:5398289..5398313 (25 bp)
GCCATGAGGGAGATCCTCCGCAAGA
LOC_Os01g10260
OsAffx.22146.1.S1_x_at--837--3791Chr01:5398274..5398298 (25 bp)
CTCCGCAAGAGGTCGAGGTCCAACA
LOC_Os01g10260
OsAffx.22146.1.S1_x_at--1094--2771Chr01:5398268..5398292 (25 bp)
AAGAGGTCGAGGTCCAACAGCCCGA
LOC_Os01g10260
OsAffx.22146.1.S1_x_at--463--2151Chr01:5398252..5398276 (25 bp)
ACAGCCCGAGGGACCACGGCCATGG
LOC_Os01g10260
Target Sequence 
AGAAGCCGCGGAGGATCTCGATGGAGGGGCTCCAGCGCGCCATGTCCGACCTGGCCCTGGAGCTCACCAAGAAGCAGCAG
GTGGCGGACGCGGCAGCCGGCGGCGGCGGCGGCGGCGAGAAGCTGCCGGAGATCACGGAGCAGCAGCAGGTGGTGGTGGA
GGAGGCGCGGTGCGAGTGCTGCGGCATGCAGGAGGAGTGCACGCCGGAGTACGCGCGCCGCGTCCGGGAGCGCTACTGCG
GGCGGTGGGTGTGCGGCCTGTGCGCCGCCGCGGCGAGCGCCGAGGCCGACAGGAGATGCCGCCACGGCGGCACCGGGTGG
ACGACGGCGACGGCGGAGGAGGCGCTGGCGGCGCACATGGCGGTGTGCGGGCGGTTCAACCGCGTGGGGCGCGCCAACCC
GGTGCTGATGCAGACGGAGGCCATGAGGGAGATCCTCCGCAAGAGGTCGAGGTCCAACAGCCCGAGGGACCACGGCCATG
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22146.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis